G78400 (LOC107747473,LOC107550334,LOC107654802)


Basic Information

Item Value
gene id G78400
gene name LOC107747473,LOC107550334,LOC107654802
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 1276515 ~ 1277127 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU116026
AAAATATGGTGTCTATCAAATGGCCAAGTTAGAGGAGCCCTGTTCCTCTCTGAGATCTGGGACTGCAGGAGGCTGACCGGATCCCTGCCGGACCATTTCCCTCCACGAGCGCTGAAGCTCCTCCGAAGACGACACCAGAGAGGCCTCAGGAGGGGCCGACAGGTTGATAGGACTCCAGGTGGACTCCAAACATGACTTAGGGCTCTCAACCACGGCCTTCACAAAGGACACTTCCCACGACGGGTGAGTGGTGGTCAGATCGACGCAGGACAGGTCCAGCGAGCTGGCCAGGACAGGTTTCTGAAACTGGACTCTCTCGTAGGGTGTGGAGGACTTGCCCTCCACCGGACTTCCCAGAGCCGTGCTCAGGGAGCTGCCTGGAGAGAGGGCGTTCTTGCTGAGGGCAACTAAAGGCGATAAAAGGCTTGTGGAGTAGTTCAGACAGGGTGCAGCGGCAGAGCCGGGCTCGGGATACTCCAGCACGATGCCTCTGTTTGGTCTCAGGAAGCCGTCGGCGGAGACCGCTGATAAAGACAGACTCTGGTCTGCGCAAAAGCCTCTGTCAAAATCAGACAGAGATGGGCCCTCATAGCTCCTGGTCAGCTCTGGAAAA

Function

NR:

description
PREDICTED: uncharacterized protein LOC107747473

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU116026 True 613 lncRNA 0.58 1 1276515 1277127

Neighbor

gene id symbol gene type direction distance location
ift52 ift52,LOC107730620 coding upstream 502 1270083 ~ 1276013 (+)
srsf6b LOC100690823,LOC103156038,LOC101480010,LOC102289851 coding upstream 6919 1264285 ~ 1269596 (+)
acot8 acot8,LOC107670930,LOC107730625,LOC107722006 coding upstream 12288 1260783 ~ 1264227 (+)
ppp1r3db LOC107730614,LOC107551316,LOC107654797,LOC107722003 coding upstream 62970 1211847 ~ 1213545 (+)
znf831 LOC107558955,LOC107730612,LOC107670927 coding upstream 96716 1168152 ~ 1179799 (+)
mybl2b mybl2,mybl2b,LOC107654799,LOC107670940 coding downstream 653 1277780 ~ 1284953 (+)
dtx3l2.2 LOC107654785 coding downstream 7983 1285110 ~ 1290204 (+)
LOC122354215 LOC107654785 coding downstream 13980 1291107 ~ 1300799 (+)
lrp1aa LOC107654787,LOC106565466 coding downstream 31546 1308673 ~ 1414799 (+)
hoxc13b NA coding downstream 258900 1536027 ~ 1538014 (+)
G78380 NA non-coding upstream 53680 1217224 ~ 1222835 (+)
G78370 NA non-coding upstream 81052 1195224 ~ 1195463 (+)
LOC122353680 NA non-coding upstream 201935 1071074 ~ 1074580 (+)
G78089 NA non-coding upstream 851437 424386 ~ 425078 (+)
G78081 LOC107747831,LOC107561793,LOC107684010 non-coding upstream 868111 405735 ~ 408404 (+)
G78455 NA non-coding downstream 145606 1422733 ~ 1425764 (+)
G78467 NA non-coding downstream 192541 1469668 ~ 1471384 (+)
G78468 NA non-coding downstream 202047 1479174 ~ 1482149 (+)
G78479 NA non-coding downstream 236752 1513879 ~ 1514178 (+)
G78471 LOC107551319 non-coding downstream 244849 1521976 ~ 1524078 (+)
LOC122353696 LOC107670931,LOC107551313 other upstream 84794 1186866 ~ 1191721 (+)
cnbpb cnbpb,cnbp,LOC107742027,LOC107675970,LOC108431552,LOC106566283 other upstream 199116 1074707 ~ 1077399 (+)
tsen2 tsen2 other upstream 236276 1034409 ~ 1040239 (+)
atg7 atg7,vgll4,vgll4b,LOC107697561,LOC107750032,LOC107750033,LOC107697562 other upstream 362716 848175 ~ 913799 (+)
atp2b2 atp2b2,LOC107561799,LOC107570616,LOC107746712,LOC102776443,LOC107697566 other upstream 567025 603138 ~ 709490 (+)
rbms2a rbms2,LOC107730618,LOC108424578,LOC107654803,LOC107565002,LOC107709509,LOC102312407,LOC107681488,LOC107551328 other downstream 142393 1419520 ~ 1448960 (+)
rargb LOC107730622,LOC107681487,LOC107551317,LOC107681495,LOC107754558,LOC107557540,LOC108424631,LOC105907526 other downstream 208580 1485707 ~ 1517963 (+)
G78500 NA other downstream 313617 1590744 ~ 1593125 (+)
G78506 inpp1,LOC107737355,LOC107683640,LOC107730897 other downstream 367504 1644631 ~ 1726097 (+)
nabp2 si:ch73-190f16.2,nabp2,LOC107572067,LOC107557546,LOC107683643,LOC107675336,LOC107737367,LOC106565411 other downstream 401099 1678226 ~ 1681200 (+)

Expression


Co-expression Network