G78467


Basic Information

Item Value
gene id G78467
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 1469668 ~ 1471384 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU116118
AAGAAAGCTCCGAGCTCAGATCTGTGCCTCTTTGACTTTGACCCAGTGACCAGGCTCCCTCCCTTCAGAGGCACGGGCTGCCGGAACAAAAACGCAGGCGAGGAGGGGGCGTGCGCGCGCCTGGGAAATCACGCGTGGCACGTGGAGCTCGGGGTTGATCCTCGTGACGGTGAAAGTGAAAGTCTGCGCCTGACATCATCGTGCCCGATGACATGCAAAACGTGCAGACGACGCGTCGTTCTGAACTGACCTGGGCTGCCGTCCATGGCGCCTGTTCCCGGTGTCGGTGAAGGAAATGCGGGCGTCTGAGTGGACTCTGTAATTTTCAGCGTGTTTCGAATTCCGTCCGGACAGGTAAGAACTTCAAGAAGTCTGTGAAGTGTCTCGAGAAAGAAGAGATGCTGTGATGTCTCTGGAAGATGTCCTCAAAGACGCTGCTCTTCAGAGCCGGTGCGCTGGCATCGTCCTCCAAGAGCCGTGTAACTAGTTCGAGGCATTCACGAGCATCCCATACAAACACCGGACACGTTTTCAGGTGTCTTAAAAATGTGACTGAGTTTCCCCCCCTCACTAGTTCCCCCCTCCCTTCGTTGCCCTTTAAATTGTTTGTGTTATTGTATGCCAAGAACTGTTGCTCCGTTTCACACGccctctttctttccttcccaGTCACGCTTCTGTAGTAGATCTGCAGTGCCTtccttcctctccctctctctctctctcctcctcctcctcctcctctctgctcTCGGTGGCAGATGACTGCGCGTGGACTCGTTTGCCATCGGAATGCCT

Function

GO: NA

KEGG:

id description
ko04710 Circadian rhythm

RNA

RNA id representative length rna type GC content exon number start site end site
TU116118 True 798 lncRNA 0.55 2 1469668 1471384

Neighbor

gene id symbol gene type direction distance location
lrp1aa LOC107654787,LOC106565466 coding upstream 54869 1308673 ~ 1414799 (+)
LOC122354215 LOC107654785 coding upstream 168869 1291107 ~ 1300799 (+)
dtx3l2.2 LOC107654785 coding upstream 179464 1285110 ~ 1290204 (+)
mybl2b mybl2,mybl2b,LOC107654799,LOC107670940 coding upstream 184715 1277780 ~ 1284953 (+)
ift52 ift52,LOC107730620 coding upstream 193655 1270083 ~ 1276013 (+)
hoxc13b NA coding downstream 64643 1536027 ~ 1538014 (+)
hoxc6b LOC107551320,LOC107707362,LOC107660782 coding downstream 72238 1543622 ~ 1544764 (+)
lima1b LOC107707364,LOC107687370,LOC107754562,LOC107551335 coding downstream 130323 1601707 ~ 1618526 (+)
igfbp6a LOC107718979,LOC107687374,LOC107696018,LOC107730876,LOC107557535 coding downstream 160443 1631827 ~ 1633704 (+)
pip4k2cb pip4k2cb,LOC107730889,LOC107557542 coding downstream 164503 1635887 ~ 1643236 (+)
G78455 NA non-coding upstream 43904 1422733 ~ 1425764 (+)
G78400 LOC107747473,LOC107550334,LOC107654802 non-coding upstream 192541 1276515 ~ 1277127 (+)
G78380 NA non-coding upstream 246833 1217224 ~ 1222835 (+)
G78370 NA non-coding upstream 274205 1195224 ~ 1195463 (+)
LOC122353680 NA non-coding upstream 395088 1071074 ~ 1074580 (+)
G78468 NA non-coding downstream 7790 1479174 ~ 1482149 (+)
G78479 NA non-coding downstream 42495 1513879 ~ 1514178 (+)
G78471 LOC107551319 non-coding downstream 50592 1521976 ~ 1524078 (+)
G78472 LOC107557538,LOC107681486,LOC107707358,LOC107551319 non-coding downstream 52963 1524347 ~ 1529157 (+)
G78484 NA non-coding downstream 87476 1558860 ~ 1562656 (+)
rbms2a rbms2,LOC107730618,LOC108424578,LOC107654803,LOC107565002,LOC107709509,LOC102312407,LOC107681488,LOC107551328 other upstream 20708 1419520 ~ 1448960 (+)
LOC122353696 LOC107670931,LOC107551313 other upstream 277947 1186866 ~ 1191721 (+)
cnbpb cnbpb,cnbp,LOC107742027,LOC107675970,LOC108431552,LOC106566283 other upstream 392269 1074707 ~ 1077399 (+)
tsen2 tsen2 other upstream 429429 1034409 ~ 1040239 (+)
atg7 atg7,vgll4,vgll4b,LOC107697561,LOC107750032,LOC107750033,LOC107697562 other upstream 555869 848175 ~ 913799 (+)
rargb LOC107730622,LOC107681487,LOC107551317,LOC107681495,LOC107754558,LOC107557540,LOC108424631,LOC105907526 other downstream 14323 1485707 ~ 1517963 (+)
G78500 NA other downstream 119360 1590744 ~ 1593125 (+)
G78506 inpp1,LOC107737355,LOC107683640,LOC107730897 other downstream 173247 1644631 ~ 1726097 (+)
nabp2 si:ch73-190f16.2,nabp2,LOC107572067,LOC107557546,LOC107683643,LOC107675336,LOC107737367,LOC106565411 other downstream 206842 1678226 ~ 1681200 (+)
G78763 NA other downstream 1206751 2678135 ~ 2680142 (+)

Expression


Co-expression Network