G78471 (LOC107551319)


Basic Information

Item Value
gene id G78471
gene name LOC107551319
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 1521976 ~ 1524078 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU116125
tatgcattcatatttcACCTGTTTCTCCAGCTGATGCTGCTCTTGTTCCTTCTGCAGGACTCTCAGACTAGCTCTCAGTTCCTGTATGTTTTCACACACGTGATGCAATAATATCCAAAGAATATAGTGAAAAATGCATACGTCACATTTTATGCTATCTGTGATGGGACTAAATTTCAGGGAAATCTTAAGTGGCATTATCAAGAAATACTTAGGGTCTTGGGTACTATTTGTGTTTCCAAGAATACAGACGTATCAGACACTGAAAAGTTTATAAGCATTTCTAAAGTAACATTATttgctttaatgttatttagattttaaggGGTCATGACATGCCTTTCTTAATATCTCCCTTGAGGTAACATCTTTCCATTCCATTCTTTTAACAAAATGCCAACTTAAAATATTGCTATAGAAATCTCATTTTGTCTTAATATCATATGGACTGTTTTTGTATTAACTACAGCAGAGTCATTTCTAAAACCATGCCAATCCAATACCCATAATCCACGAATGTTAGAGTAAGGtcaactctttttttgttttttcctccttGATCTGTGGAGGCCACTTTAAGTACTTATTTTTAAGCAGTTCAACCAACATCCACTAACATCAATGATGAAGGCAAAACCCTTCTGTAAACATGCACATGCATTTCATATTGTTTTCAAATCTATTTCGGGGCATCTTATTTACAAGTTTTTTTAAGCAACTCTTGCCTCATACTGGTGTTGCTCCAAGACCAGTAATCTGATCCACATATGTGCTGGGTATCCAGAAAGCTCTGAtgttaaagtttaattatagGCCTTGCATGTGTCATGGAATATTTACCCGGTTACAGTCCTTCTCGTTGCCCAGCTCCACTTCCAGTTTTTCTCGCTCAGTTCTCTCCTCCTGAAGCCACTCTTCCTTCTTCTGAAGCTCACGGCTCAGTTTCTGAATACGATCCTTATCCAACTTTAACAAGAGCACGGAGATCGAGAAGCACGTACTTACTAGGGGTGTCGTAGCTGGACTGATAAAAACGGTGGCTTGCCCCTCACGCAGTGCCAGGTTGGCCTGGGACAGCTGTAAACTCATCTGTGCAGACTGAAGTCTGACCTGATGCAGTTCTGCATGGCTGTGACTCTGTAAGGAGCCCAGGTCACTCAGGTCCCTGCGGAGGGCCTCAGTGCTGCGCTCGCTGGCCTCCAGACGCTCCTGCAGGGTCCGCAGCTCAGCATGAGTCTGCTCGTTCTCTACCTACAgagaaatgattcattcacacatTAACATGCATCTAGTCCAGTGTAGATTGTACATGAATACAACATCATCATCACCTGTAAATCTCTCCTCTCTTTTTCCTCATCTCGCCTTTGTATGGTCATCTTTTTaactctttctttcattctgcaGAGACAAATGGCTGTTTTATCTTTTCCttaaacactgttttatttACTCAGTTTGTTAAATTTCAGagatattaataaacaaagaaaagacaTGCTGTTTTGAAGATCCCTAATCACCTGTCAAGCTCGGCCTCTATGTCCTGCTTTTGTTGAGTCAGAGTGGCAGCATCCCGTTGGAGCTCTTTGATTTGCTGTTGGTTTTCATCTCTATCTGCTAGCAGCCCGCTAAGTTCAGTAGTCATGCTTTGCACGTCCtttgtttttgttcgaGTTCCTCAATTTTTTCAGCGCTTTGCCTCAGGTTGTTTTTTAGCTCATCGGTCTGACTCTTCATCTCATTTTTTACTCGTTCAAGCTCATCTTTTTCAGCTTTCcatctctccctttctctctcgaCCTCAGCATCCGCAGCCTCAAACCTCTTACGCAGCTCACGTAACTCAAGCTGACATCCTTCTAAGAGATTCTGTAGAAATACCAGAAATCCATTGCTAAAT

Function

NR:

description
PREDICTED: calcium-binding and coiled-coil domain-containing protein 1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU116125 True 1903 lncRNA 0.41 3 1521976 1524078

Neighbor

gene id symbol gene type direction distance location
lrp1aa LOC107654787,LOC106565466 coding upstream 107177 1308673 ~ 1414799 (+)
LOC122354215 LOC107654785 coding upstream 221177 1291107 ~ 1300799 (+)
dtx3l2.2 LOC107654785 coding upstream 231772 1285110 ~ 1290204 (+)
mybl2b mybl2,mybl2b,LOC107654799,LOC107670940 coding upstream 237023 1277780 ~ 1284953 (+)
ift52 ift52,LOC107730620 coding upstream 245963 1270083 ~ 1276013 (+)
hoxc13b NA coding downstream 11949 1536027 ~ 1538014 (+)
hoxc6b LOC107551320,LOC107707362,LOC107660782 coding downstream 19544 1543622 ~ 1544764 (+)
lima1b LOC107707364,LOC107687370,LOC107754562,LOC107551335 coding downstream 77629 1601707 ~ 1618526 (+)
igfbp6a LOC107718979,LOC107687374,LOC107696018,LOC107730876,LOC107557535 coding downstream 107749 1631827 ~ 1633704 (+)
pip4k2cb pip4k2cb,LOC107730889,LOC107557542 coding downstream 111809 1635887 ~ 1643236 (+)
G78479 NA non-coding upstream 7798 1513879 ~ 1514178 (+)
G78468 NA non-coding upstream 39827 1479174 ~ 1482149 (+)
G78467 NA non-coding upstream 50592 1469668 ~ 1471384 (+)
G78455 NA non-coding upstream 96212 1422733 ~ 1425764 (+)
G78400 LOC107747473,LOC107550334,LOC107654802 non-coding upstream 244849 1276515 ~ 1277127 (+)
G78472 LOC107557538,LOC107681486,LOC107707358,LOC107551319 non-coding downstream 269 1524347 ~ 1529157 (+)
G78484 NA non-coding downstream 34782 1558860 ~ 1562656 (+)
G78490 NA non-coding downstream 48516 1572594 ~ 1575125 (+)
G78517 NA non-coding downstream 144944 1669022 ~ 1669695 (+)
G78540 NA non-coding downstream 242293 1766371 ~ 1766589 (+)
rargb LOC107730622,LOC107681487,LOC107551317,LOC107681495,LOC107754558,LOC107557540,LOC108424631,LOC105907526 other upstream 4013 1485707 ~ 1517963 (+)
rbms2a rbms2,LOC107730618,LOC108424578,LOC107654803,LOC107565002,LOC107709509,LOC102312407,LOC107681488,LOC107551328 other upstream 73016 1419520 ~ 1448960 (+)
LOC122353696 LOC107670931,LOC107551313 other upstream 330255 1186866 ~ 1191721 (+)
cnbpb cnbpb,cnbp,LOC107742027,LOC107675970,LOC108431552,LOC106566283 other upstream 444577 1074707 ~ 1077399 (+)
tsen2 tsen2 other upstream 481737 1034409 ~ 1040239 (+)
G78500 NA other downstream 66666 1590744 ~ 1593125 (+)
G78506 inpp1,LOC107737355,LOC107683640,LOC107730897 other downstream 120553 1644631 ~ 1726097 (+)
nabp2 si:ch73-190f16.2,nabp2,LOC107572067,LOC107557546,LOC107683643,LOC107675336,LOC107737367,LOC106565411 other downstream 154148 1678226 ~ 1681200 (+)
G78763 NA other downstream 1154057 2678135 ~ 2680142 (+)
G78790 NA other downstream 1301461 2825539 ~ 2826794 (+)

Expression


Co-expression Network