G78484


Basic Information

Item Value
gene id G78484
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 1558860 ~ 1562656 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU116144
TCGAGATCATCGGCCTCCTGAACCGGCGCTAACAGCGGCGCAGCTATAAAACCCACCAGTTTACATCcctggaagaagaagaaatcgACTTAAAACCCACATAAGGAGACAAACTAAAGAGACATGTAGCCAAGCACAGAAAGCATTAAGTGTCTCATGCACCACTGACACAAAAGACTACTTTTACAACATAAAATTAGATACCGAACCTTACTTAAAACACAGTTGAAAACTTGCTCACTGTGCTAGTTCGGCACTCATGTTTTCACCACAACCACGAAAACAACCAAGCAACAAAATCTTTACACGGTTACCTAATTTTGATGAGCACAAATAATTcacatgaagaaaaataaacaaaactaaaattctCCTCTTACCTACCAGTCTGGTATGTTAAATACCTTACTTTGGTAGCTGTTTCTCGCTAGTCTTATAACAGCAATCATCTGTTCTCAATAAGACTGCTGGCGATTCCAATAAGCTAGCCTCTCAGCTGGCTCATCCCAACGGCTAGCCTCTCTCCGATGGACCGCTTCTGAAAAGTCTCTTCTCTTTGGCTAGCCTTTAAGCTGGCTCCTCCCGATGGCTAGAATCTCTGCTGGCACTTCATCGGATAGTCTGACCGCTTACGTGCAAGGTTGCCTTCAGAGTGGCTAAAAAAATCCTCTCATGGATTTCTTTCCCCAGCGGAACTCAAACAAAGAAACGCGTGCCAGGACGCGCGTTAGGCCCGATTGTAAATACAAGCTAGTTAAAGTTTTGCGGTTCAATTCGTAGATCTCCGATTCGTTTACAGGCATTTCACGCGGAAGTCGAGGCAAAGCAGCGCGCGTTATTTAACCCAGGCTTGCGAATGCTTTAACCCAAGGTCGAGGCGACTTCGGGGTAAAGATTCACGTCCACGTCGACAAAAAGACAGATCCCGGCAGCGTCAGAACACGCGGCGGGTCTGCTGCGTGAAACACCCGGCAGTCGCTCATGCATCTTCACAAATTGACCGAAATCAAAACACTGAcgaatgcaattaaataaaaaaactggagCGGTTTATTTAATCTTGATTGGTGActgttcacattaaaaaaaaaaaaaaaaaaaggaaaagaaaagaaagcaaagaaagtaaatgtaaaagaaaaaaaacacagacacccTACTGGTTCAAGAGAAAAGCCAACACAACAATTAAACCCTGCATAAAATCTCATTGGAATGCTTTGCActtcacagacaaaaaaaagggaaaactaCAAACTAGTAAATGTCTTCCAGGACAAcgttccttttttttgttggttttttaaCCCCTTCAACCCCCCGCCCCCATTCCCACATGATTCTCCTCCCCTATTGAACACGTTCTCTTCGTATGGCAGACGTTAATATCGCCGCCACACTGCTTGGCTGGGCAGATCTAGGTGTAAACCTGCTTGCTTCTCTCCTTTCCCTGTCATCTCTCTCTGGCTCTCCTCTAAGTACTGTGGCCTGTTGGACAATACGGAACATAAATTCAGTTACACTTTGCAACCTTGCTTTGTCTTTATCAAGAGCTGAACTGGAGGGGAATGAGTAGTAGTAGCACAGAAGCAAACCTTCAGGTCAGCTAAGACCGCATGGTTAGGACAATGGGGATGAGTTTGCATGTGCTGCAGCCAGAAGGTTTGGAGAGCAACTCAAAATCAACATTCGTCTTGTCGATCTTAGCTTTATTAGATTTGAAGGTTTGCTGCTGGATCCCCTGCACTGAAAACTCGATAGCTTTACTCATTTACCGACCAATTGAAGAGTGATTACGGGCTAACATTTGCATAGGTTACGCATCTTATGAGATGTTTGGACATGGATGAGCTAAAAAGCAAACTAATGGCTAACTTCAGAGTCCTCTTCCACACGCGGGGCAGTCCTTACCCTTGGAAACTAAAACCTCCGCCCACCGGAGCCGCCTCCGTAACCTCCGCCAGAGCCTCCTCCGTAACCGCCTACAAAAAGAAGCGGCATTGAGACACCCGACTTCTCCAAGCATGAGGAGAACGCGCTCATTGGACGGCGCTGCGGCGTTCGCTCACCTCCATACGGGCCGCCGCCGCTCCTTCCGCCTCCTCCACCGCCGTAGTTCCCTCCCTTCATCGGGCCGTAGTTAGAGGAAGATTGATTGTTGTAGTTGCCGAAGTCGTTGTAGTTATCATAGCCGCCGCCGCCTCCGCCGTAGCCTCCACCCTGGTTCCCGTATCCACCGCCGCCTCCGCCGCCGCCTCCGTATCCTCGGTTGCCGCCGTAATTCGGCCCACCTCCACCGTAGCCTCCTGATGAAGAGACGGGAGATAAACACGGTCATGGAAACAGTGCTCGACGGTCAAGCGCGATCGctttcttaatatttatataccatTTCCTCCGTAGCCATTATATCCATCTCCTCCACCGTAGCCACCTCTTCCTCCTCCATATCCACCTACATAAGGaagacatttcaaaataaacaactCGTAACACACTGTGGACCAGGACTTCTTAAAAAGGCGGCTCAGTGTGTTCCTGAGTTTTTCCACACAACTTTAATGGCTCATTTCGGTACGGTACGCAATTAAGTCCATTTCCGTTGTTAACGTTACCAAAATAGCCAACCTTACCGTACCTTTCCACGGAGCGGTCAGATACAGAACACCCTAATCCAGCTTGTATTTCCACCACCACTGGGACCCTTAGTGCGTGTCGGAAAGTAGCGGTCGGCGATAAAGCGTGACGATAAGCAcaattcagttttaatgtacagtaaaacccattataaaagtattagaGGCTACGGTcaagttcaaaataaacatataaagtttaaaataactgtgtttGGCCAGAACTATACGACCAGGAGCAAATAAAATACGCATGAAACCACGAACGCATGTTACGAAAACGGCATGATAAACTCTTCACGACAcagtaacagtaatattttaaagattggCGTTTTTTGGGCCACAACGTTTCTCAAGTCGACAAGAACGCATATTAAAACAACGACTATTGTCTgtgaaaatttaaaatcataaaatgttttttgctcaCTCTGATGTGAATAAGCCAATGCAAATAAACTCAAGACTGGAAAGCGTGAAGAGATCCCGATTCTACTCGACCAATCACGCTCCTGCAGTGAGTTTAGCTCCACCCTTTCCTGCGCTAGGCATGTCCTCGCAGAAGGGGACCAAAAAAGCGGCTTAGTTCGCTACAATCACTATGGAAACGGACAATTGCGCACCGAGCTGCACCGCTCAGTGGAAACGAGCCATAAATAATCACTTCCAATTATTGCGTGAAGAAATATGCATTGTACAAAATTAAAGTAGAATTCATCTAGTCAAGTACGGCCTTAAAATCTCTGTGATATACAACAGGAACGAGAACGCATGCAAAGGTGTACCTCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU116144 True 3429 lncRNA 0.45 2 1558860 1562656

Neighbor

gene id symbol gene type direction distance location
hoxc6b LOC107551320,LOC107707362,LOC107660782 coding upstream 14096 1543622 ~ 1544764 (+)
hoxc13b NA coding upstream 20846 1536027 ~ 1538014 (+)
lrp1aa LOC107654787,LOC106565466 coding upstream 144061 1308673 ~ 1414799 (+)
LOC122354215 LOC107654785 coding upstream 258061 1291107 ~ 1300799 (+)
dtx3l2.2 LOC107654785 coding upstream 268656 1285110 ~ 1290204 (+)
lima1b LOC107707364,LOC107687370,LOC107754562,LOC107551335 coding downstream 39051 1601707 ~ 1618526 (+)
igfbp6a LOC107718979,LOC107687374,LOC107696018,LOC107730876,LOC107557535 coding downstream 69171 1631827 ~ 1633704 (+)
pip4k2cb pip4k2cb,LOC107730889,LOC107557542 coding downstream 73231 1635887 ~ 1643236 (+)
ube2v1 ube2v1,LOC107572061,LOC107683645,LOC105022328,LOC106572481,LOC103044311,LOC108425074 coding downstream 82242 1644898 ~ 1650340 (+)
csnk2a4 LOC107730901,LOC107683644,LOC107572060,LOC107696034,LOC104930306,LOC108424612,LOC103042686 coding downstream 87834 1650490 ~ 1657144 (+)
G78472 LOC107557538,LOC107681486,LOC107707358,LOC107551319 non-coding upstream 29703 1524347 ~ 1529157 (+)
G78471 LOC107551319 non-coding upstream 34782 1521976 ~ 1524078 (+)
G78479 NA non-coding upstream 44682 1513879 ~ 1514178 (+)
G78468 NA non-coding upstream 76711 1479174 ~ 1482149 (+)
G78467 NA non-coding upstream 87476 1469668 ~ 1471384 (+)
G78490 NA non-coding downstream 9938 1572594 ~ 1575125 (+)
G78517 NA non-coding downstream 106366 1669022 ~ 1669695 (+)
G78540 NA non-coding downstream 203715 1766371 ~ 1766589 (+)
G78625 NA non-coding downstream 238695 1801351 ~ 1802313 (+)
G78652 LOC107550538,LOC107697642 non-coding downstream 336077 1898733 ~ 1899063 (+)
rargb LOC107730622,LOC107681487,LOC107551317,LOC107681495,LOC107754558,LOC107557540,LOC108424631,LOC105907526 other upstream 40897 1485707 ~ 1517963 (+)
rbms2a rbms2,LOC107730618,LOC108424578,LOC107654803,LOC107565002,LOC107709509,LOC102312407,LOC107681488,LOC107551328 other upstream 109900 1419520 ~ 1448960 (+)
LOC122353696 LOC107670931,LOC107551313 other upstream 367139 1186866 ~ 1191721 (+)
cnbpb cnbpb,cnbp,LOC107742027,LOC107675970,LOC108431552,LOC106566283 other upstream 481461 1074707 ~ 1077399 (+)
tsen2 tsen2 other upstream 518621 1034409 ~ 1040239 (+)
G78500 NA other downstream 28088 1590744 ~ 1593125 (+)
G78506 inpp1,LOC107737355,LOC107683640,LOC107730897 other downstream 81975 1644631 ~ 1726097 (+)
nabp2 si:ch73-190f16.2,nabp2,LOC107572067,LOC107557546,LOC107683643,LOC107675336,LOC107737367,LOC106565411 other downstream 115570 1678226 ~ 1681200 (+)
G78763 NA other downstream 1115479 2678135 ~ 2680142 (+)
G78790 NA other downstream 1262883 2825539 ~ 2826794 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G243615 NA non-coding CI01000057 null 1216702 ~ 1221552 (+)
mexican tetra (Astyanax mexicanus) G203762 NA non-coding NC_035920.1 CM008323.1 6421950 ~ 6486904 (-)