G78517


Basic Information

Item Value
gene id G78517
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 1669022 ~ 1669695 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU116194
gtacaaATACAGTGgaatcatgttttttaattacaagCTTCTTCACAACTGTCACAGTGATAAAGCCTCAGATTATGCAGTGGCCAGTTGCCTAATGCATTCAAGTCGTGTTTTTCACAGTTCAATATTGCAGAGATTTCAGTCACAAAGAAACGGAACAATTCAGTGAAGGAAATGTGCATATTCTATCTAGAATAATCTAAGcgaaatatgattatttaataaatggatCACTGCTAGAGGGCAAGGATGTGTGCTTAAACCTTACACAATGTTATCAATGTCTCAACAAACATCAACTaatgtcttttttaataaatgtgtgctGGTGGTAATGTATAAGCTACCAAACACAAACTCAATCACGTGTGAATCCAGAGCAGAAAATACAATTCAACTAATTAGCAGTAAAGCTAAACACAAGCCAATGAAGGCAAGTTATTTTCAAATAGATCTTACAATGGGCTACTAAAAGTTATATCTATAGTACAACATACACTCTTTCGATTACAAAATGCATGATCTAAAATATATCCTCATTTCTCTACAACTGTATCTTCTGATCTTCGAGCTTCGGCTTCACTTGGGGAAGCATCCCAGTGATTTAGCAGGAGCCATCAACATATTAGCCTGGTTGTTGTGTGTGATGTGGAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU116194 True 654 lncRNA 0.36 2 1669022 1669695

Neighbor

gene id symbol gene type direction distance location
tp53rk tp53rk,LOC107557544,LOC107730899,LOC107696036,LOC107572066,LOC107683647 coding upstream 4682 1662085 ~ 1664340 (+)
csnk2a4 LOC107730901,LOC107683644,LOC107572060,LOC107696034,LOC104930306,LOC108424612,LOC103042686 coding upstream 11878 1650490 ~ 1657144 (+)
ube2v1 ube2v1,LOC107572061,LOC107683645,LOC105022328,LOC106572481,LOC103044311,LOC108425074 coding upstream 18682 1644898 ~ 1650340 (+)
pip4k2cb pip4k2cb,LOC107730889,LOC107557542 coding upstream 25786 1635887 ~ 1643236 (+)
igfbp6a LOC107718979,LOC107687374,LOC107696018,LOC107730876,LOC107557535 coding upstream 35318 1631827 ~ 1633704 (+)
zgc:113184 LOC107683652,LOC107737353,LOC107572062,LOC107557547,LOC107730888,LOC107696038 coding downstream 30988 1700683 ~ 1703661 (+)
dnajc14 LOC107683641,LOC107737354,LOC107730896,LOC107696039,LOC107557550 coding downstream 47619 1717314 ~ 1723715 (+)
mcrs1 mcrs1,LOC107683638,LOC107696040,LOC107730878 coding downstream 62106 1731801 ~ 1738760 (+)
suox suox,LOC107683635,LOC107737358,LOC107562243,LOC107696022 coding downstream 69348 1739043 ~ 1745824 (+)
LOC122354125 Tuba1a,tuba1a,LOC108255233,LOC107683637,LOC108247626,LOC106934846,LOC102789989 coding downstream 80059 1749754 ~ 1752168 (+)
G78490 NA non-coding upstream 93897 1572594 ~ 1575125 (+)
G78484 NA non-coding upstream 106366 1558860 ~ 1562656 (+)
G78472 LOC107557538,LOC107681486,LOC107707358,LOC107551319 non-coding upstream 139865 1524347 ~ 1529157 (+)
G78471 LOC107551319 non-coding upstream 144944 1521976 ~ 1524078 (+)
G78479 NA non-coding upstream 154844 1513879 ~ 1514178 (+)
G78540 NA non-coding downstream 96676 1766371 ~ 1766589 (+)
G78625 NA non-coding downstream 131656 1801351 ~ 1802313 (+)
G78652 LOC107550538,LOC107697642 non-coding downstream 229038 1898733 ~ 1899063 (+)
G78674 NA non-coding downstream 267165 1936860 ~ 1939086 (+)
G78757 NA non-coding downstream 818519 2488214 ~ 2488553 (+)
G78500 NA other upstream 75897 1590744 ~ 1593125 (+)
rargb LOC107730622,LOC107681487,LOC107551317,LOC107681495,LOC107754558,LOC107557540,LOC108424631,LOC105907526 other upstream 151059 1485707 ~ 1517963 (+)
rbms2a rbms2,LOC107730618,LOC108424578,LOC107654803,LOC107565002,LOC107709509,LOC102312407,LOC107681488,LOC107551328 other upstream 220062 1419520 ~ 1448960 (+)
LOC122353696 LOC107670931,LOC107551313 other upstream 477301 1186866 ~ 1191721 (+)
cnbpb cnbpb,cnbp,LOC107742027,LOC107675970,LOC108431552,LOC106566283 other upstream 591623 1074707 ~ 1077399 (+)
nabp2 si:ch73-190f16.2,nabp2,LOC107572067,LOC107557546,LOC107683643,LOC107675336,LOC107737367,LOC106565411 other downstream 8531 1678226 ~ 1681200 (+)
G78763 NA other downstream 1008440 2678135 ~ 2680142 (+)
G78790 NA other downstream 1155844 2825539 ~ 2826794 (+)
camk2n1 si:dkey-33m11.6,LOC107572850,LOC107680422,LOC107555994,LOC107751034,LOC107714486,LOC107699327 other downstream 1600504 3270199 ~ 3272619 (+)
LOC122353713 LOC107714487,LOC107555999 other downstream 1688515 3358210 ~ 3361658 (+)

Expression


Co-expression Network