G78549


Basic Information

Item Value
gene id G78549
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 1444615 ~ 1449005 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU116244
tggaattcaagagatcagtttaaaaaaaggcacaaacaaaaacagaacatttttgttgttttttttttagtttttcttaaaaaaaaaaaaagataacagaAAATCAGAAACTGTGGCACAGGAAGACAAACGTCCGGCTGGAAGCTCCGGTGAACATGCAAACAAACCACCAAACTGTTTCTTCAGCTACCTGTACAACACGTGTTATCCTATAAAtaaagaatgtttaaaaaaagctgttcaAGAGACAAGCCATGTGTTCAATAATcacatcaccaccaccaccagcgCAAACACGTCTCAGTCTCCCGACCCAAAACAACTAACAGCTCGTTTCTTGAGGCACTTGGGTTACAGCTTCAACACAAAATAACTTTATGGCTTTATCTGGCGAACAGCTTGAACACCCCATGTTAGCAGCAACACATTTTGAAACTATGAAATGATCTCCTCCGGAAACTAGCAGCTCTTTTTGGAAAATCTGAACTGATCGATgcggttaaaaaaataaaacggtaaTTTAGATGTATGCGGTCGATCTGAATAAAAAGCAATACATCATTTCATAGTTTCAAAACCATGTTTAATGTCTTGTGTTAATAATGGACGAAACGATTTATCAGCTCCACAACCGAAATAAATCCCCCTTTCCTTCATGAGGCGAACTGCGAAAATGAGTTTAGTACAGAAGATCTGACTCGAATACATCAACGGTAAAGTCACACTGAAAAGGAAAACGACCAGACCATTTTTTTAGTAGGAAACAATTTGCTGTCGTACTCTAAAGTCATGTTGTGTCTCGGTGGCGTAGCTATCTTTGGTGGCCGAACGAATCCGTTCTTTGGGAATCTGAAGACTGATGGTAAACTGTAAAAGAGGTATTGAGCGCGTCTTTGGATGCGATGTCAAGCTATCCTAGACGGTAATCGCGCTAGCAGCTATTTTTATGGATGGAGGAGAGTCTCTTAATGAAAACCATTTAATAGTTCATGGctttacattcattaaaatgtaaaatgcatcaaGGGAAGCTCTCAGACGGTGCGTCGTGTCTTTAGTGTTTTAGAATATAAGCCCTTGTGTTTCTATCCTATAGAAGAGCCATTCTACTCTACGCTCTTCAAAATAAAGGCGCTTCAAAGGTTCCTCACAGAGATGCCGTAGAAGAACCATTACTGATTTCACAAAGAACCAAAGGCGTGTCTAGAATCTGAGGAACCTCAATAACGTTCAGTggaacagaaaggttcttcagaggTTCTTTacggaaccatttagacaaaaatggCACCTTCGTTTTTTAAGAGCGTAAGACACTTCTACAGTATGTTTAAGTGTACGAAAATAACTCGATGATATCAAAACGTTTCATTTTGGATATTCAGACTCCTTCAGACTCCATGATTGACCGAGACAGTACATTTCaagtaaaacaacaaacagcaCAGAGAAGAACATAAAGAAACTCAAGAAAATGTCTTtcctttgcacacaaaaatccTATTCATCtggcattttaaaaaggaacGGCGACACGTTTTCAGAAAGTAAAGCTTTGCCCAAACACTACAGCTAATCACACTTGAAGGATAAAATCATGATCATTAAAAAACCAGCAGCATGAAGGAAGAAAGCGACTACATGCGCTGAAGAACTGCTTCTGTCCTTCGTGATCTGTTTCATAGAAGAGTTTTTCCTGCTATACGTGTCTCAGGTATAACCCCAGCACCGGTTGGAAGATATTTCTACAAATCTCTGGAAAAGCCATGATAACACACAAcctgatgacacacacactgctAACGTCTCTCTTTTAACACgctaacaataaaacacaggcCTCGGGTCTGGGAACGTATTTGGAGAAATGAGTCTCCGCTTCCAGCGTttcatcagaatgagagtctgataaaaacatcacgatcATCCACagaactccagtccatcagtgaacatctggaggaGTTTGCTTCAgacaaaaatatctgaaaaaaaaccctacaaaCCAATGtttcagacaaaaatatttaatcatttttaataaagtttaacttttaaaattcagAGCCGTTTTGGACGGTTTCCGCTTGTGAACGGTACTCGATCTGTGCAGATTCTGTCCTTATTCATGAGATTTTTAACCGGAGAAAGCagtattatggattatggactcatatttcAGCCAGAAGCAACGGTTTGTGAAAAAACATGGGTTGATAACCTGTGCATCACTGTGATGTTTCTTCAGCATTCACTGATGAACACTTCTCAAAATCTACACCTCGGACGATTGTAGTTGGAAACTTTAGATAAAAGGTAGCACAAATAAACTTCATCGTAGAAGGTTAAGACAggcaaattttttaaataatctacaAAACACGTGTAAGATGTAGGCCTTGATTTCCTTCTGTTCTCATGTGTTTGATGGATTGATTTCTacggttaaaaaagaaaagtgaagcTTCAGACCAGACTGAAACGTGCATCTGCTTCCCTACAGCCGAGGTCTAGCAGTGTGGGATCGACAAACCTCAAAGTCATGTGTTATCATCACTTTTATGAACTATTTTTGATATTAATAACCACTTAAAGTCACTTCCTCGAGACTCATCTGTACGAAACACTATGATCTTTATCAAGCACGTTTAAACAGCATTCAGAAACCTGAAACATTGGGTGCCGTTACTGTATACACATCAGAAAactaacaaaatgtttttttaattttaaataaaaaggaattGATCGTGAACGTTTGGCAGGTTAtctttagatttaaaatgcCCCTCATAAAACGACTTTTTATAAActtaattaaactaatttattcatttctgcATCAAATATTTGATACGAACTCAAATGGACAAAGCTTTATTGCCTCGCTATGCAGGAACacctgtaataaataataagttaatGATTGTCTGTTGCTTTAAGAGAGGATTGGATTAGAGTGATTTCATCACTATTTCTTAAAATGGCCGCCGCATGAAGAAGTGgctttaaatggttttaaacgCCTAAACATCACACGACAGGTTCAAGAACAGGACAACCCAAAAGCACTGTTTGCATATTAATCTgtacaaaaatatcttactgctgctgactgaagaaaaaaaaaagaacaaatctttaaaaaagttgcatattttacaaaaaacacatttttaacttttttgatccTCCCATATTAAAGAATTAgttcttaaaaataagaatttgcCATTACGTGCATAAAAGAACACATTGTGTTTTCCTTACCCTTTTCTAAAATCAACGtagtttttttacacttttttttttttctgttttgttatcAAAAAGATGAACGAGTGCTAGCTCTTCTGCACTTCTCCCACCGTTGGCCGAGGGACTCCTGAAGAGAGAGGAGTCGAACAAAAGATGAGTGACCTCCTTTTATGTCTCTGTCCTACAAAAGATGCCCGCTCCTTTCGTGATCCGCGTCGTCTCCGGTCCTCCGTCGGTCCCGAGAGACTCCCAGCGTCCGGAGCGCGGCGAGCACCTCCACACCACCTGCCGAGGAAAAACGGCTCATGTTCTGGGAAAAGGGGCTCGAACCCTTCAAATCATTCATAAatgctcaaaacaaaaaaaaaaagtcagcaagTAATGGAGCAGATATTATAACTTTCTTTCTGAAGAACAGAGCTGTAACTGAATAGTTTTGTTGGaaatttaattcatgttttttaatgctatttatatattcgatgaaaaatacagaacaagcttttatttaattatcgctattattattattttctattttattcctTTGTAATAATCGGCACGCGTACTCATTAATCCTTTATTCTAATCGTGATCTAATTTAAATCGTTTTAATACGCCGGTATATTATCGATGTTGGGACTCGTGATGCTTTTTCACAGGATTCTTcactaaataaaaagtgtttattcaaaacagaaatTCAATTTACAACGCTATTCAAAATTTggaattttcttattttttttaatatattaataaatttctTTATCCATAAAAGATGTGCTAAATGGATAAAAAAGTGATAATTAAGAgtagaaaacactgaaattgccgtaatatttcacagtattactgttttttctgCATCTTTGATCATCGAATCAGTGCAAAACACTGATTATCATCACTAAACCGGTTTTTGACTCGAAACGGCTTATAATAAAAAGTAGTTTATGAATAGTTTATTAGAGGCAAGCCGGTTTCACGTCTGCTCTTACCGTAGCTTCATTTGCTGTGTTGATAGGAATAATTAGTGTGTTCTGAAGGCGTCTCCATGGaaacctgctgctgctgctgctgctgtccgCTGTTT

Function

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
TU116244 True 4354 lncRNA 0.37 2 1444615 1449005

Neighbor

gene id symbol gene type direction distance location
si:ch73-303b9.1 LOC107654802,LOC107747473,LOC107550334 coding downstream 167259 1276367 ~ 1277356 (-)
fam217bb NA coding downstream 232931 1208200 ~ 1211684 (-)
pdrg1 pdrg1,LOC107730611,LOC107722004,LOC107670939,LOC107654798,LOC107580937,LOC107654789 coding downstream 237778 1205119 ~ 1206837 (-)
trnac-gca_119 NA coding downstream 280274 1164270 ~ 1164341 (-)
trnac-gca_118 NA coding downstream 280961 1163583 ~ 1163654 (-)
faim2b faim2b,LOC107730619,LOC107681489,LOC107565004,LOC107741574,LOC107551329 coding upstream 604 1449609 ~ 1455138 (-)
nr1d4b nr1d4b,LOC107681485,LOC107730617,LOC107551331,LOC107654804,LOC107565003 coding upstream 10569 1459574 ~ 1471248 (-)
calcoco1b LOC107681486,LOC107551319,LOC107557538,LOC107687106,LOC107707358 coding upstream 70327 1519332 ~ 1529182 (-)
smug1 smug1,LOC107551321,LOC107707359,LOC107660781,LOC107557534,LOC107687108 coding upstream 99020 1548025 ~ 1551955 (-)
hnrnpa1a hnrnpa1a,LOC107551332,LOC107707363,LOC107754559 coding upstream 109490 1558495 ~ 1564655 (-)
G78555 NA non-coding downstream 8686 1434638 ~ 1435929 (-)
G78440 LOC106565466,LOC107082107 non-coding downstream 53509 1389790 ~ 1391106 (-)
G78413 NA non-coding downstream 145656 1287293 ~ 1298959 (-)
G78419 NA non-coding downstream 148457 1292961 ~ 1296158 (-)
G78410 NA non-coding downstream 159671 1281732 ~ 1284944 (-)
G78572 NA non-coding upstream 61976 1510981 ~ 1511526 (-)
G78573 NA non-coding upstream 63000 1512005 ~ 1512232 (-)
G78574 LOC106524655 non-coding upstream 63831 1512836 ~ 1513903 (-)
LOC122354127 NA non-coding upstream 290695 1739700 ~ 1741018 (-)
G78726 NA non-coding upstream 474700 1923705 ~ 1924282 (-)
phactr3b phactr3b,LOC107730624,LOC107670936,LOC107722000,LOC107654794,LOC107550338,LOC103365918,LOC106955159,LOC104947949 other downstream 184525 1217219 ~ 1260090 (-)
LOC122353728 NA other downstream 469828 972954 ~ 974787 (-)
G78195 atp2b2,slc6a1b,slc6a1,LOC107561799,LOC107570616,LOC107670967,LOC107746710,LOC107570615,LOC107697564 other downstream 650479 599107 ~ 794136 (-)
G78170 NA other downstream 988617 453134 ~ 455998 (-)
G78144 alas1 other downstream 995714 443885 ~ 448901 (-)
LOC122354408 LOC107683642,LOC107737350,LOC107572058 other upstream 139699 1588704 ~ 1696787 (-)
nab2 nab2,LOC107557549,LOC107730902,LOC107696037,LOC107683651,LOC107737369 other upstream 255619 1704624 ~ 1716129 (-)
LOC122354491 gata2a,gata2,LOC107680419,LOC107744843,LOC107573143 other upstream 1364347 2813352 ~ 2816128 (-)
LOC122354336 srpk2,srpk1b,LOC108428417,LOC107714507,LOC107699336 other upstream 1370583 2819588 ~ 2830203 (-)
trnaf-gaa_29 NA other upstream 1388278 2837283 ~ 2837354 (-)

Expression


Co-expression Network