G78574 (LOC106524655)


Basic Information

Item Value
gene id G78574
gene name LOC106524655
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 1512836 ~ 1513903 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU116271
GGCAGATTTTGAAAAAACCTTTTTGGGTTAATTCGGCAAAAGCACACGTGTTAAAAACAACCAAGCCTGCAAGCCTTCTAGTCTGAGGAATTCTTCAAAGTTTTGTACCCGAACCTGCTAGAGTTTCTGAGTGGACCTCAGATATTCAGATTTGCATCAAGTAGAAATTACATAGAAAACTGCAGATATCAACTAGGCGAGGGTGCATTAAACATATCAAGTTCCAAGACTTTATCAGATTCTTCATACTGAGTTCCATGCAGACATAAACAAAGCGTACCTTTAGTGCTTATGCCTCGGAGGTCAGTGACCTTCATCAACATTCGTGGGAACATGTGAGGTTTGTTGGGGCGTCTCCGCCGAGCGTAGATCTTTAACGCCTCGAGCAGAGGTTCCTGCAGCTGGTCCACCCGATGAGGTTCCTCCAGGTCCATGCGATCTACTCATTCATCCACGACATGTCAATCAGAGTTCAGTGACAGTAGGAGAAATAAACCAACCGTGGAGTCGTGGAGAACCTACTCTTTACTGTTAATCCAAGTCATAGTTTCCACATGCAATTGAGTTTCTATCTGTAAGTAGTTGGATCGACATCTTTGTCAACCCTGGAACAGCactgtgattaaccaatcagatctgaaggaccagtttatagttttgtgaaatttaggcttacaatcagtgtttggtacatcagtgtcattcatctatcttTTCCTCTGATTTCAGGCATTACTCATGCGTCAGGTGTAGATATATGgtcaaaactacatttttggatttaaaAGTTGATCCCTGTTTCAAAATCAGGACATGCAAACAATTAGAGAAGAACTGAGTAACACACTGAGCGACCGCAGTACCTCCGCAGATGAGGCAGATGGCGCTCAGGAGCCCTGTCTCTGTGTCGTCCATCTCCAGGGGCAGGAGCTGTCCAGCGAAAGCAAACACCAGGTCTGTGAGAGGCCCGAAACCAGCGTTGTGCATCTGTGTCCTGTTGAGGGTCAGTCCATCTGAAAAGGTCATAGTATCCTGCTCTGGTGTGTAGCGAGTACAAATCCGTAACAT

Function

NR:

description
PREDICTED: retinoic acid receptor gamma-A isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU116271 True 1068 lncRNA 0.45 1 1512836 1513903

Neighbor

gene id symbol gene type direction distance location
nr1d4b nr1d4b,LOC107681485,LOC107730617,LOC107551331,LOC107654804,LOC107565003 coding downstream 41588 1459574 ~ 1471248 (-)
faim2b faim2b,LOC107730619,LOC107681489,LOC107565004,LOC107741574,LOC107551329 coding downstream 57698 1449609 ~ 1455138 (-)
si:ch73-303b9.1 LOC107654802,LOC107747473,LOC107550334 coding downstream 235480 1276367 ~ 1277356 (-)
fam217bb NA coding downstream 301152 1208200 ~ 1211684 (-)
pdrg1 pdrg1,LOC107730611,LOC107722004,LOC107670939,LOC107654798,LOC107580937,LOC107654789 coding downstream 305999 1205119 ~ 1206837 (-)
calcoco1b LOC107681486,LOC107551319,LOC107557538,LOC107687106,LOC107707358 coding upstream 5429 1519332 ~ 1529182 (-)
smug1 smug1,LOC107551321,LOC107707359,LOC107660781,LOC107557534,LOC107687108 coding upstream 34122 1548025 ~ 1551955 (-)
hnrnpa1a hnrnpa1a,LOC107551332,LOC107707363,LOC107754559 coding upstream 44592 1558495 ~ 1564655 (-)
znf740a znf740a,LOC107754560,LOC107557541,LOC107551334,LOC107687104,LOC107687371 coding upstream 51757 1565660 ~ 1587830 (-)
slc2a10 slc2a10,LOC107696032,LOC107737362 coding upstream 143393 1657296 ~ 1661964 (-)
G78573 NA non-coding downstream 604 1512005 ~ 1512232 (-)
G78572 NA non-coding downstream 1310 1510981 ~ 1511526 (-)
G78549 NA non-coding downstream 63831 1444615 ~ 1449005 (-)
G78555 NA non-coding downstream 76907 1434638 ~ 1435929 (-)
G78440 LOC106565466,LOC107082107 non-coding downstream 121730 1389790 ~ 1391106 (-)
LOC122354127 NA non-coding upstream 225797 1739700 ~ 1741018 (-)
G78726 NA non-coding upstream 409802 1923705 ~ 1924282 (-)
LOC122354525 NA non-coding upstream 969767 2483670 ~ 2484928 (-)
G78756 NA non-coding upstream 973581 2487484 ~ 2487836 (-)
G78769 NA non-coding upstream 1182506 2696409 ~ 2696697 (-)
phactr3b phactr3b,LOC107730624,LOC107670936,LOC107722000,LOC107654794,LOC107550338,LOC103365918,LOC106955159,LOC104947949 other downstream 252746 1217219 ~ 1260090 (-)
LOC122353728 NA other downstream 538049 972954 ~ 974787 (-)
G78195 atp2b2,slc6a1b,slc6a1,LOC107561799,LOC107570616,LOC107670967,LOC107746710,LOC107570615,LOC107697564 other downstream 718700 599107 ~ 794136 (-)
G78170 NA other downstream 1056838 453134 ~ 455998 (-)
G78144 alas1 other downstream 1063935 443885 ~ 448901 (-)
LOC122354408 LOC107683642,LOC107737350,LOC107572058 other upstream 74801 1588704 ~ 1696787 (-)
nab2 nab2,LOC107557549,LOC107730902,LOC107696037,LOC107683651,LOC107737369 other upstream 190721 1704624 ~ 1716129 (-)
LOC122354491 gata2a,gata2,LOC107680419,LOC107744843,LOC107573143 other upstream 1299449 2813352 ~ 2816128 (-)
LOC122354336 srpk2,srpk1b,LOC108428417,LOC107714507,LOC107699336 other upstream 1305685 2819588 ~ 2830203 (-)
trnaf-gaa_29 NA other upstream 1323380 2837283 ~ 2837354 (-)

Expression


Co-expression Network