LOC122354408 (LOC107683642,LOC107737350,LOC107572058)


Basic Information

Item Value
gene id LOC122354408
gene name LOC107683642,LOC107737350,LOC107572058
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 1588704 ~ 1696787 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU116306
aTTTTCTGGCAAAATATAGCTGAAaatctgcaaataaaaaaatggttgcATGATTTCAGTGTTATTAAATGTTCTTACAGCTTCTTTTTATTTGGCTTTTCTGTTTCAAAAACCCTCTGCGACAGACAACATTTCAATGTAAACCGTTTATGAAATTGGAGTGGGTCTACTTTGCAATCGTTGATCATATGGTCTGCAATCTCTGATTCTGAAAATATTCTCCGAAACTTTTCACAGGATGCTTATCTAATTTTTCAGAAAATCTATCAGCCTGTGATGAAAGACTAACTTAAAGCCATGCAGTATTCTGAGCTCAAAACCTATGGGGATCTTGGAGAAACGCACCAAATGTGATCAGATTCTGGTCTTCTGGGGCACTATAACTTACAAaaccttaatatttaaaacagataATCAAAAGTTGACTAACAATCAGACGTTGGGCTAGAAACTATAATAGCTTGGTGTGTTCATTCTGGAGagcataaaacaagaaaaacaggaCGCAATACCTCAAAAGAAATCTGACTTTACAAGACTGGAAAATCCATAAAGTTAAACaaatatacgtgtgtgtgtgtgtgtgtttgtgtgtgtgtgtgtgatac
>TU116313
aTTTTCTGGCAAAATATAGCTGAAaatctgcaaataaaaaaatggttgcATGATTTCAGTGTTATTAAATGTTCTTACAGCTTCTTTTTATTTGGCTTTTCTGTTTCAAAAACCCTCTGCGACAGACAACATTTCAATGTAAACCGTTTATGAAATTGGAGTGGGTCTACTTTGCAATCGTTGATCATATGGTCTGCAATCTCTGATTCTGAAAATATTCTCCGAAACTTTTCACAGGATGCTTATCTAATTTTTCAGAAAATCTATCAGCCTGTGATGAAAGACTAACTTAAAGCCATGCAGTATTCTGAGCTCAAAACCTATGGGGATCTTGGAGAAACGCACCAAATGTGATCAGATTCTGGTCTTCTGGGGCACTATAACTTACAAaaccttaatatttaaaacagataATCAAAAGTTGACTAACAATCAGACGTTGGGCTAGAAACTATAATAGCTTGGTGTGTTCATTCTGGAGagcataaaacaagaaaaacaggaCGCAATACCTCAAAAGAAATCTGACTTTACAAGACTGGAAAATCCATAAAGTTAAACaaatatacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
>XM_043252581.1
CTCAAAAAGTCAAACACCTCAGGAGCCCGCTCGTCGTGTCGTGTCTGTTTCACGGCAGATGGCGCAGTGAACCGGCGGCTTCGTGTTACAGCGAGGCTGGAGAATCCGCTAACTAGTTCCCCTTCATTAGTAACGACCTAAAACATTGCTTGGTTATCGTGTCCTGATGGGTGAGCTCCGTCCTGACTGACCCGTGGAGATGGGAGTAGTAAAGATAAGCGAGCAGtCACTCCTCGTCCAGGCGGTATTTAGCCAGAATGCTGAAATGGTGGAATTTTTGTTGGAGCAAAATGAAGAAGTCGACGAACTGGACCACGAGCGCCGCACCGCATTGCATGCTGCGTCTCACGTAGGTGGTGTTTATATCATGGACCTCCTCATCAGTTCAGGTGCTGATGTTAACGCTAAAGACCAGGAGTGGCTGACTCCTCTGCATCGGGCAGCCGCCTCACAGAACGAAGGTTCTGTCGGGCTGCTGCTGGGAAAGGGAGCCGAGGTGAACGCGCAGGACAGGTTCTGTCAGACGCCGCTGCATGTAGCTGCAGCCAACGGAGCCAGGAGCTGCGTGGAAATGCTGATCCCTTACTCGAGCGGCCTGGATGCAGCGGACCGCTTCGGGAGAACCGCTTTGCATCATGCAGCCCACTGCGGACACGACGGAGTGAACCTGCTCCTAAATAAAGGGGCCAACGTGACTTCCAGAGACATAAAGGAGAGACAACCTATCCATTTGGCAGCTCATCTAGGGCATCTGGAGGTCGTCAAGCACTTAGTAGTGCGCAGTGCGGATGTGTCCTGCAGAGACAAGCAGGGGTTCACTCCTCTACATGCGGCGGCTCTCGGTGGACACACTGAAGTGGTCGGGTACCTGCTGAAACACGGAGCAGAGATTGATGAAGCAGACGGCTCCGGTAACAGCGCTCTGCACATGGTGTGTCACGCCGGGCTCAGGGCGGTAGCTAGTGAGCTGGTTAACTGCGGCGCCGGTGTTAACGGGTTAAACGCGCATGGCTGCACGCCGCTGCACCTGTCCGCTGCCTCCGCTGATGGAGCCCTGTGTCTGGAGCTGCTGGTCAATCACGGGGCAGATGTTAACATTCCGAATAAGGCCGGGAAGAGTCCTTTGCACATGGCTGCCATGCACGGACACTTCACCCGATCCCAGATACTCATTCAAAATGGTGCAGAGGTGGAGTTTGTTGATAAATCTGGTAATACTCCTCTTCACTCTGCTGCTAAACACGGTCACGAGTTACTCATCACTATACTCTTGAGTAACGGCGCGGATGTGGCCAGGCGAGGCATTGACGGCATGACTTCGTTGCACCTGGCAGTGTTTTTTGGATTTTCAGACTGTTGCCAGAAGTTACTCTCCTCAGGGTTTGATATAAACACAGTGGACCGTCTGGGAAGGACGTGCCTGCATGTAGCTGCTTCAGGCGGGAATGTTGACTGTCTTAAATTGCTGTTAAACAGTGGTGCTGCTCTGAATAAAAGGGACGATTTTGGAAGGTCCCCTTTGCACTATACATCAGTGAACGGCTCATATCTGTGTACAGTGGCTCTGGTGAAAGCTGGAGCGGATGTTAATGAACAGGATATGAACGGATGCGCTGCACTGCACTACGCAGCCGCGGCCCAAACCTCACACAGTAGAGTTGAGCAGATCTGTCCCGACAGTGAGACTGATGAAGAAGCTCAGTGGTGTTTGGAGTTTCTTTTGCATAATGGTGCTGATCCAACACTGCGGGACAATAAAGGCTTCAGTCCGGTCCACTACGCAGCTGCCTGTGGTGACAGACACAACCTAAAATTGCTTATAGAAATGTCTTTCAAATGTGTGGAAGATGTGGAGAGTTGTGTTCCTGTGAGCCCTTTTCACTTAGCGGCGTATAATGGCCACAGTGAAGCTCTTCAAGTGCTGTCTGAAATACTGGTCAATGTAGACATGCAGGATCCCAGGGGTCATACAGCTCTGTATATGGCTGCTCTGAAAGGTCATGACCTTTGTGTGGAGCTTCTGCTGCTTCAAGGAGCCTCGTATGCCATCAGGGAGCACATCCACAGGTGGACACCATTGCATGCTTCAGCTGCCAATGGTCACACCGACTGCCTGCTTATGATGttgaaaagagaggaaaaaaatgacataattgaCCTCATGGACATACATGGACAGACTCCGCTGATGTTGGCTACACTGGGCAGTCACATAGACTGTGTCCACATGCTGCTTGAGAGAGGAAGTAATCCAGACACTGGAGACAGAAGAAGCCACACAGCATTGCATCGCGCAgcaGTGGTTGGTAGCGAAGAGTGTGTCTCAGCTTTGCTGGTGCATGGAGCCTTCGCTCTGTGCCGGGACGTTTATGGCAGAAGCCCTTTGCACTTGGCTGCCTCTTGTGGTCACACATGGCTGTTGCGTCCTTTGCTTGATGCGGCGTCGCTGTCGGACCCCCTCGACTCTCTGCTAGACTACAGCGCCTACACACCTACTCACTGGGCTGCTTACCATGGGCACAATGACTGTCTAGAAGCTTTACTTGAGTACAGGCCATCGAGCTTTCAGGAAGGGAACGCCTTCACACCGCTGCACTGTGCGCTAATTGCTGGTCGTGATGGTGCTGCTCGACTGCTTGCTGAAACTACGGGAACAAAAATCATGCACCTCACAGATGGCAAAGGAAGGACTCCCTTACATGCATCTTCGTATGCAGGAAACGTGGCATCGCTGCATTTGGCGTTGACCTGCGGCTCGGATGTAAACTCAGTCGATTATGCAGGGCGCTCCGCATTAATGATTGCTGCTGAGAATGGCCATACTTCTGCTGTGGATATCTTGCTTCATCAGGCCGGGGCAGACCTCTCGCTGCTGGACATCGACGGGAATTCAGCGCTTCATATGGCCTGTAGAAGAAGTCATGAAATGTGTGCTCTTCTCATTCTGGCGGAGATCGACGACCCAGCTCTCATCAACACCACAAACAGTGCCCTTCAAACACCTCTGCATGTTGCAGCAAGAAATGGCCTCGCCACTGTGGTTGAGGTTCTGCTTACTCGAGGCGCAACGGTTCTGGCCATTGATCAAGATGGACATATTCCGGCTTTGGCATGCGCACCAAACAAAGACGTGGCTGATTGCTTGGCTCTTATAATTTCCACAATGATGCCTTTTTCTGCCGGCACCGGCTGCAGCATCAGTCTGATGAATCACTGTGGCATTGCTGCATCCCATCAGCCCTTGTCCAAAGCCGTGCCTATACAACTGATTACAGAGGAACCATAGAGATGAACGGACACCAAACAATATGCTGAACTCTTGCCACTCATCTTTATCGTACAAGACTATATACAATGCTACTGCTTCAGCATCATGCTGTACATACTGTGACATATTCATTTCTAATACAGTACACCAATACAACTGCACCATTCCATTATGTGCTGAATTCCTCCTTTTTACGTAGCCTGTGTTTGTTGTAACACCAAGTTAGCACTGTGCTTTTATTTCAATCCTCGTTTCTTGTTATGAACAGTTCTAGTAGACTTTAATCATCATTTTGTACTGTAGAGTTGCACAATATGCACACATATCAGCATATCTCCAGGTTTACCGGAGGTTCGTTTGgggatttcattttaatagtttaattatgAAGTAACATTGTTGTCAGATGCCCAAGTATACTACCAGAAGCTCAAAATGATGGCATTTAGAAGAAAATTTGGAAGTAGTGTAGCCTGgagtgcatataaatatatcatcacaaaaaataaagatcaaGAGCACATAACAAGGTCTCTGCATGTTAATctaaatggtttatttttcccGGTTATGACGTTATTAATGCCGACCAAGTCTGTTGCTCTCAGTGAGCACTTTATTGGAATACAAATGATACAGTTTGCAGGTCAAAGACACATGAAATCCCATGTGCCTTAAAGAGCAGCCACACTTGCCTTTACATTGAAATATTGGGTCAACTGACTTGAAGAGCACTTTACACGGCATACAGTAGATCAGATGGCCTAATCTTGTTTTTGCAAAGTTTAGTGATTAATTCCTGGTTCTGTTAAATACGTAATCGCTGATGTTACAGTTGCTGAGTTGCATTCATTGGTTGGCTCCACAGTTAGCCCCTACATTCATCCACTTTGACCCCTTGTGGCCAGTTCCCTGACCTTTAATAAATAGGACAGAAGAGCATTATCACAGATAATCAGCCAGTCATAGTGTAACAGAGGCACGGCctttcacattattttccagTTTCGTCCTGTCACGCAATGCATAGGAAACTCATAAAATGGCCTCCCGACCTTTATCTTGGTGTCACTGTTGGGACGGTTACTTTTGAACAATCAGTACTTTGGACACTTTCATCTCctcttttgtaatgtttatcAATGTCTGATCAGCAAAGCATAAAAACAAGAGTCGAAGCaaaccttattattatttttttccatttctttttatttatatcagaaTTTTCTGGCAAAATATAGCTGAAaatctgcaaataaaaaaatggttgcATGATTTCAGTGTTATTAAATGTTCTTACAGCTTCTTTTTATTTGGCTTTTCTGTTTCAAAAACCCTCTGCGACAGACAACATTTCAATGTAAACCGTTTATGAAATTGGAGTGGGTCTACTTTGCAATCGTTGATCATATGGTCTGCAATCTCTGATTCTGAAAATATTCTCCGAAACTTTTCACAGGATGCTTATCTAATTTTTCAGAAAATCTATCAGCCTGTGATGAAAGACTAACTTAAAGCCATGCAGTATTCTGAGCTCAAAACCTATGGGGATCTTGGAGAAACGCACCAAATGTGATCAGATTCTGGTCTTCTGGGGCACTATAACTTACAAaaccttaatatttaaaacagataATCAAAAGTTGACTAACAATCAGACGTTGGGCTAGAAACTATAATAGCTTGGTGTGTTCATTCTGGAGagcataaaacaagaaaaacaggaCGCAATACCTCAAAAGAAATCTGACTTTACAAGACTGGAAAATCCATAAAGTTAAACaaatatacgtgtgtgtgtgtgtgtgtgtgtgtgatcctggcccacaaaatcagtcatggGTATATCTGTAGCAATACGCAATAATTTGGTCAAAGGAAACATTTatggttaaaaatgtatttttttatgccaaaattcattaggacattaagtaaaagaagatattttatacatttcctaCCGTCATTTATATCAAAATTGATTATCAATCAAGTTctcaatgtttattttcttcacaCCCTCAGATCAATTAGTTcatatctcagccaaatatcaTCATGACGACgtataaatgtcaatttaaaaactgattttgtggtcatatatatatatatatatatatatatatatatatatatatatatatata

Function

NR:

description
PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C-like

GO: NA

KEGG:

id description
K06867 K06867; uncharacterized protein

RNA

RNA id representative length rna type GC content exon number start site end site
TU116306 False 608 lncRNA 0.35 2 1588704 1681160
TU116313 False 622 lncRNA 0.36 2 1593234 1681160
XM_043252581.1 True 5424 mRNA 0.46 29 1680230 1696787

Neighbor

gene id symbol gene type direction distance location
znf740a znf740a,LOC107754560,LOC107557541,LOC107551334,LOC107687104,LOC107687371 coding downstream 874 1565660 ~ 1587830 (-)
hnrnpa1a hnrnpa1a,LOC107551332,LOC107707363,LOC107754559 coding downstream 24049 1558495 ~ 1564655 (-)
smug1 smug1,LOC107551321,LOC107707359,LOC107660781,LOC107557534,LOC107687108 coding downstream 36749 1548025 ~ 1551955 (-)
calcoco1b LOC107681486,LOC107551319,LOC107557538,LOC107687106,LOC107707358 coding downstream 59522 1519332 ~ 1529182 (-)
nr1d4b nr1d4b,LOC107681485,LOC107730617,LOC107551331,LOC107654804,LOC107565003 coding downstream 117456 1459574 ~ 1471248 (-)
cnpy2 cnpy2,LOC107572063,LOC107557548 coding upstream 797 1697584 ~ 1700458 (-)
inpp1 inpp1,si:ch211-160o17.2,LOC107737355,LOC107683640,LOC107730897,LOC107562242 coding upstream 28483 1725270 ~ 1729839 (-)
LOC122353575 sarnp,LOC107696044 coding upstream 65788 1762575 ~ 1766074 (-)
mmp19 mmp19,LOC107696043,LOC107716751,LOC107570443,LOC107737372,LOC107683650 coding upstream 81522 1778309 ~ 1786347 (-)
pmela pmela,LOC107737361,LOC107716752,LOC107683629,LOC107696046,LOC107570442 coding upstream 92965 1789752 ~ 1797665 (-)
G78574 LOC106524655 non-coding downstream 74801 1512836 ~ 1513903 (-)
G78573 NA non-coding downstream 76472 1512005 ~ 1512232 (-)
G78572 NA non-coding downstream 77178 1510981 ~ 1511526 (-)
G78549 NA non-coding downstream 139699 1444615 ~ 1449005 (-)
G78555 NA non-coding downstream 152775 1434638 ~ 1435929 (-)
LOC122354127 NA non-coding upstream 42913 1739700 ~ 1741018 (-)
G78726 NA non-coding upstream 226918 1923705 ~ 1924282 (-)
LOC122354525 NA non-coding upstream 786883 2483670 ~ 2484928 (-)
G78756 NA non-coding upstream 790697 2487484 ~ 2487836 (-)
G78769 NA non-coding upstream 999622 2696409 ~ 2696697 (-)
phactr3b phactr3b,LOC107730624,LOC107670936,LOC107722000,LOC107654794,LOC107550338,LOC103365918,LOC106955159,LOC104947949 other downstream 328614 1217219 ~ 1260090 (-)
LOC122353728 NA other downstream 613917 972954 ~ 974787 (-)
G78195 atp2b2,slc6a1b,slc6a1,LOC107561799,LOC107570616,LOC107670967,LOC107746710,LOC107570615,LOC107697564 other downstream 794568 599107 ~ 794136 (-)
G78170 NA other downstream 1132706 453134 ~ 455998 (-)
G78144 alas1 other downstream 1139803 443885 ~ 448901 (-)
nab2 nab2,LOC107557549,LOC107730902,LOC107696037,LOC107683651,LOC107737369 other upstream 7837 1704624 ~ 1716129 (-)
LOC122354491 gata2a,gata2,LOC107680419,LOC107744843,LOC107573143 other upstream 1116565 2813352 ~ 2816128 (-)
LOC122354336 srpk2,srpk1b,LOC108428417,LOC107714507,LOC107699336 other upstream 1122801 2819588 ~ 2830203 (-)
trnaf-gaa_29 NA other upstream 1140496 2837283 ~ 2837354 (-)
trnap-ugg_7 NA other upstream 1141454 2838241 ~ 2838312 (-)

Expression


Co-expression Network