G78625


Basic Information

Item Value
gene id G78625
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 1801351 ~ 1802313 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU116382
caactattttaatgttttatttctttactcaacataaatgattgaaataattttaataaaatgtcttcTACAACAACATGCTTTATGTTCATTGTCTACAAGATCAGTCAAGTGGAAGTTTATCCTTAAACCAAAACGGCACACATCACAGATGAAAGCATCATGACACATTTTTGATGCTCTCACCATTACTCATATAGtgctttatacaatacagattgtatcaaagcagctttacagtaaatataaatagtacaattaaaaaaaacagtgtgcaAGAGAATAGTAAGCATTCAAAGTCAGTTCACAATCGATTCAGTTATTTTGGTCGTTTCAGTTCAATAGAATCTATTCAATACAATCGTCAATATTTTCAGAAATTGAGTGTCCCCAGCTAAGCAAGCTAAACATGACAATTGCTGGCCAGACTAAACTGATATAGCGTGGTTTAAATCCAGGCtgcaacacaacacacacgattttaaaatgcacaaaatgcttAAACCAagctaatatggtcatacttgGCTCTAGTAAGAACTCCAGCTGCTGCACTTGGACCagctttagtttgtttattaaaggaACCGTCAAAGTGGGGAGAATGTCTGTAGCCCCTCATTTCAGAAGATCCAGGGATTGGATCCACATCTAGCGGGTAGGTGGTGCTGCAGCGACTGATCAAATTATCATCAGAGTACAGCAAGATGTAATACGACATTCGGTCACTGCAACGACGCTTCAAACTGAAAACACctatgtgtatgtgtaagaTGGAAGGAGTTGGACCTGGATCTTGTGTTTCGCAGTGAAGACCATCATTGTTTATATGTATTGTAAAACCAAGAGAGCCCAATAGAGGTCAGTGGTGCAGTGTTAAGCAGTTCTCCAGCACCATTAAAAACGGAAAAAAAGCAAGAGTGCAGCGTATGGCACTTGTGTATGTTGAGGTGTGTCGTTAAA

Function

GO:

id name namespace
GO:0019904 protein domain specific binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU116382 True 963 lncRNA 0.38 1 1801351 1802313

Neighbor

gene id symbol gene type direction distance location
cdk2 cdk2,LOC107683630,LOC107570445,LOC107562245 coding upstream 27519 1766697 ~ 1773832 (+)
prph prph,LOC107683634,LOC107730884,LOC107696041,LOC107737370 coding upstream 39477 1752303 ~ 1761874 (+)
LOC122354125 Tuba1a,tuba1a,LOC108255233,LOC107683637,LOC108247626,LOC106934846,LOC102789989 coding upstream 49183 1749754 ~ 1752168 (+)
suox suox,LOC107683635,LOC107737358,LOC107562243,LOC107696022 coding upstream 55527 1739043 ~ 1745824 (+)
mcrs1 mcrs1,LOC107683638,LOC107696040,LOC107730878 coding upstream 62591 1731801 ~ 1738760 (+)
trnaq-uug_15 NA coding downstream 57984 1860297 ~ 1860368 (+)
trnap-agg_14 NA coding downstream 58520 1860833 ~ 1860904 (+)
trnas-gcu_16 NA coding downstream 58733 1861046 ~ 1861127 (+)
trnaq-uug_16 NA coding downstream 59135 1861448 ~ 1861519 (+)
trnaq-cug_12 NA coding downstream 59298 1861611 ~ 1861682 (+)
G78540 NA non-coding upstream 34762 1766371 ~ 1766589 (+)
G78517 NA non-coding upstream 131656 1669022 ~ 1669695 (+)
G78490 NA non-coding upstream 226226 1572594 ~ 1575125 (+)
G78484 NA non-coding upstream 238695 1558860 ~ 1562656 (+)
G78472 LOC107557538,LOC107681486,LOC107707358,LOC107551319 non-coding upstream 272194 1524347 ~ 1529157 (+)
G78652 LOC107550538,LOC107697642 non-coding downstream 96420 1898733 ~ 1899063 (+)
G78674 NA non-coding downstream 134547 1936860 ~ 1939086 (+)
G78757 NA non-coding downstream 685901 2488214 ~ 2488553 (+)
G78772 NA non-coding downstream 898082 2700395 ~ 2700703 (+)
G78784 NA non-coding downstream 1010064 2812377 ~ 2813282 (+)
G78506 inpp1,LOC107737355,LOC107683640,LOC107730897 other upstream 75254 1644631 ~ 1726097 (+)
nabp2 si:ch73-190f16.2,nabp2,LOC107572067,LOC107557546,LOC107683643,LOC107675336,LOC107737367,LOC106565411 other upstream 120151 1678226 ~ 1681200 (+)
G78500 NA other upstream 208226 1590744 ~ 1593125 (+)
rargb LOC107730622,LOC107681487,LOC107551317,LOC107681495,LOC107754558,LOC107557540,LOC108424631,LOC105907526 other upstream 283388 1485707 ~ 1517963 (+)
rbms2a rbms2,LOC107730618,LOC108424578,LOC107654803,LOC107565002,LOC107709509,LOC102312407,LOC107681488,LOC107551328 other upstream 352391 1419520 ~ 1448960 (+)
G78763 NA other downstream 875822 2678135 ~ 2680142 (+)
G78790 NA other downstream 1023226 2825539 ~ 2826794 (+)
camk2n1 si:dkey-33m11.6,LOC107572850,LOC107680422,LOC107555994,LOC107751034,LOC107714486,LOC107699327 other downstream 1467886 3270199 ~ 3272619 (+)
LOC122353713 LOC107714487,LOC107555999 other downstream 1555897 3358210 ~ 3361658 (+)
tmem167b tmem167b,LOC107592590,LOC107555997,LOC107699326 other downstream 1583945 3386258 ~ 3391229 (+)

Expression


Co-expression Network