G78726


Basic Information

Item Value
gene id G78726
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 1923705 ~ 1924282 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU116534
CAGTAGCTAATTACGCATACTACCATCTCAAGAACATTGCAtgaatttgatgttttgctTCCAATCAAGGCTTGGAGAAActatcaccagcagggtggattACTGTAATGGTCTTCCCGGCCTTCCCAAAACCATTAGACCTCTATAGCTCATACATTCAGACCAGAACCAGAAAATCTGAGCCAGTCCTCACACCGGATTACAATTAAAGcactcgtttataaatcactaaATGGCacaggacctaaatacattgcacgTATGCTCACCTAAACAGACCATAAACCTAACAGACCAGAAGATTCCAGATtccagaagagatcagatgtgctgaaacatcaGCCTCGTTGAAATTTAGACTCTAAACGCGCATTTATTGAATGAGCACTGCTACATCCAAACCGACacagtgttttatatataatcgttttcattttatgtataatttaatttttattttaaataaactgatttattttaaagttttaaattacttgtttgtttgttttttatgattattttatttccttttgtgtAGAGCACTTCGAATTACCAGTGCGTATGAAATCTAAGCAGTA

Function

GO:

id name namespace
GO:0042611 MHC protein complex cellular_component
GO:0042613 MHC class II protein complex cellular_component

KEGG:

id description
ko04612 Antigen processing and presentation
ko05321 Inflammatory bowel disease
ko05330 Allograft rejection
ko05332 Graft-versus-host disease

RNA

RNA id representative length rna type GC content exon number start site end site
TU116534 True 578 lncRNA 0.36 1 1923705 1924282

Neighbor

gene id symbol gene type direction distance location
pex11g pex11g coding downstream 114 1920831 ~ 1923591 (-)
si:ch73-40i7.5 LOC107592849,LOC107750992,LOC107752160,LOC107697644,LOC107550530 coding downstream 2964 1914161 ~ 1920741 (-)
abca7 LOC107550538,LOC107697642 coding downstream 9854 1889679 ~ 1913851 (-)
r3hdm4 r3hdm4,LOC107750993,LOC107752158,LOC107550537,LOC107697641,LOC107661084,LOC107592851 coding downstream 34519 1883645 ~ 1889186 (-)
LOC122354708 NA coding downstream 46290 1877275 ~ 1877415 (-)
si:ch73-40i7.2 LOC107751000,LOC107592879,LOC107699362,LOC107752169 coding upstream 1987 1926269 ~ 1936304 (-)
slc35e1 slc35e1,LOC107750991,LOC107699363,LOC107592850,LOC107752163,LOC107654177,LOC107550533 coding upstream 13087 1937369 ~ 1942381 (-)
LOC122353511 NA coding upstream 25358 1949640 ~ 1953102 (-)
cse1l cse1l,LOC107699361,LOC107750990,LOC107654178,LOC107752166 coding upstream 29268 1953550 ~ 1963610 (-)
ptprga ptprga,ptprg,LOC107699324,LOC107752167,LOC107654175,LOC106583020 coding upstream 42211 1966493 ~ 2175928 (-)
LOC122354127 NA non-coding downstream 182687 1739700 ~ 1741018 (-)
G78574 LOC106524655 non-coding downstream 409802 1512836 ~ 1513903 (-)
G78573 NA non-coding downstream 411473 1512005 ~ 1512232 (-)
G78572 NA non-coding downstream 412179 1510981 ~ 1511526 (-)
G78549 NA non-coding downstream 474700 1444615 ~ 1449005 (-)
LOC122354525 NA non-coding upstream 559388 2483670 ~ 2484928 (-)
G78756 NA non-coding upstream 563202 2487484 ~ 2487836 (-)
G78769 NA non-coding upstream 772127 2696409 ~ 2696697 (-)
G78771 NA non-coding upstream 772946 2697228 ~ 2697472 (-)
G78773 NA non-coding upstream 776231 2700513 ~ 2700729 (-)
nab2 nab2,LOC107557549,LOC107730902,LOC107696037,LOC107683651,LOC107737369 other downstream 207576 1704624 ~ 1716129 (-)
LOC122354408 LOC107683642,LOC107737350,LOC107572058 other downstream 226918 1588704 ~ 1696787 (-)
phactr3b phactr3b,LOC107730624,LOC107670936,LOC107722000,LOC107654794,LOC107550338,LOC103365918,LOC106955159,LOC104947949 other downstream 663615 1217219 ~ 1260090 (-)
LOC122353728 NA other downstream 948918 972954 ~ 974787 (-)
G78195 atp2b2,slc6a1b,slc6a1,LOC107561799,LOC107570616,LOC107670967,LOC107746710,LOC107570615,LOC107697564 other downstream 1129569 599107 ~ 794136 (-)
LOC122354491 gata2a,gata2,LOC107680419,LOC107744843,LOC107573143 other upstream 889070 2813352 ~ 2816128 (-)
LOC122354336 srpk2,srpk1b,LOC108428417,LOC107714507,LOC107699336 other upstream 895306 2819588 ~ 2830203 (-)
trnaf-gaa_29 NA other upstream 913001 2837283 ~ 2837354 (-)
trnap-ugg_7 NA other upstream 913959 2838241 ~ 2838312 (-)
trnaf-gaa_30 NA other upstream 914565 2838847 ~ 2838919 (-)

Expression


Co-expression Network