LOC122354525


Basic Information

Item Value
gene id LOC122354525
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 2483670 ~ 2484928 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU116575
aaaacatggaaactcAACACGGATATAATAAAACCCAACAAAAATTACCTAAGAGAATCTTAAGAGACAGAATATGAAAACAATGCTAGCTGAGAAGAACTGCTATAACTATTCGACTTGTATATATCCAGGGCTCTCATAGGAAGTGCTgctgattttgttttgtcttgtgcaGCTTCAGAAACATGATCGGGAAAATGAGGATGTTCCTTCCAAATGGAGATCAGAAGAGGAGATGGCGAAAGAAGCTACAGAATTACACAACCTCTTCAACTAGCTTCTTTAGttggaTATGGAGGACATCAACAAGTTGCAGATGGAAGACATCGAGAAGTTCTTATCTACCTTGAGCgtctattcaaataaaaaaaatagtttatttctgtgttgtgttttttttcccc
>XR_006252118.1
ttgtgaaatatttcagttttttcgaCAATGGaaaattacttcttttttttttttttactctacagttgtacagtataaaatcataaaacatggaaactcAACACGGATATAATAAAACCCAACAAAAATTACCTAAGAGAATCTTAAGAGACAGAATATGAAAACAATGCTAGCTGAGAAGAACTGCTATAACTATTCGACTTGTATATATCCAGGGCTCTCATAGGAAGTGCTgctgattttgttttgtcttgtgcaGCTTCAGAAACATGATCGGGAAAATGAGGATGTTCCTTCCAAATGGAGATCAGAAGAGGAGATGGCGAAAGAAGCTACAGAATTACACAACCTCTTCAACTAGCTTCTTTAGttggaTATGGAGGACATCAACAAGTTGCAGATGGAAGACATCGAGAAGTTCTTATCTACCTTGAGCgtctattcaaataaaaaaaatagttta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU116575 False 404 lncRNA 0.37 2 2483670 2484844
XR_006252118.1 True 463 lncRNA 0.34 2 2483695 2484928

Neighbor

gene id symbol gene type direction distance location
ptprga ptprga,ptprg,LOC107699324,LOC107752167,LOC107654175,LOC106583020 coding downstream 307742 1966493 ~ 2175928 (-)
cse1l cse1l,LOC107699361,LOC107750990,LOC107654178,LOC107752166 coding downstream 520060 1953550 ~ 1963610 (-)
LOC122353511 NA coding downstream 530568 1949640 ~ 1953102 (-)
slc35e1 slc35e1,LOC107750991,LOC107699363,LOC107592850,LOC107752163,LOC107654177,LOC107550533 coding downstream 541289 1937369 ~ 1942381 (-)
si:ch73-40i7.2 LOC107751000,LOC107592879,LOC107699362,LOC107752169 coding downstream 547366 1926269 ~ 1936304 (-)
trnap-cgg_2 NA coding upstream 216280 2701208 ~ 2701279 (-)
trnaf-gaa_2 NA coding upstream 216880 2701808 ~ 2701885 (-)
trnap-ugg_6 NA coding upstream 217868 2702796 ~ 2702867 (-)
trnaf-gaa_3 NA coding upstream 218467 2703395 ~ 2703472 (-)
trnai-aau_3 NA coding upstream 218631 2703559 ~ 2703632 (-)
G78726 NA non-coding downstream 559388 1923705 ~ 1924282 (-)
LOC122354127 NA non-coding downstream 742652 1739700 ~ 1741018 (-)
G78574 LOC106524655 non-coding downstream 969767 1512836 ~ 1513903 (-)
G78573 NA non-coding downstream 971438 1512005 ~ 1512232 (-)
G78572 NA non-coding downstream 972144 1510981 ~ 1511526 (-)
G78756 NA non-coding upstream 2556 2487484 ~ 2487836 (-)
G78769 NA non-coding upstream 211481 2696409 ~ 2696697 (-)
G78771 NA non-coding upstream 212300 2697228 ~ 2697472 (-)
G78773 NA non-coding upstream 215585 2700513 ~ 2700729 (-)
G78774 NA non-coding upstream 310094 2795022 ~ 2795296 (-)
nab2 nab2,LOC107557549,LOC107730902,LOC107696037,LOC107683651,LOC107737369 other downstream 767541 1704624 ~ 1716129 (-)
LOC122354408 LOC107683642,LOC107737350,LOC107572058 other downstream 786883 1588704 ~ 1696787 (-)
phactr3b phactr3b,LOC107730624,LOC107670936,LOC107722000,LOC107654794,LOC107550338,LOC103365918,LOC106955159,LOC104947949 other downstream 1223580 1217219 ~ 1260090 (-)
LOC122353728 NA other downstream 1508883 972954 ~ 974787 (-)
G78195 atp2b2,slc6a1b,slc6a1,LOC107561799,LOC107570616,LOC107670967,LOC107746710,LOC107570615,LOC107697564 other downstream 1689534 599107 ~ 794136 (-)
LOC122354491 gata2a,gata2,LOC107680419,LOC107744843,LOC107573143 other upstream 328424 2813352 ~ 2816128 (-)
LOC122354336 srpk2,srpk1b,LOC108428417,LOC107714507,LOC107699336 other upstream 334660 2819588 ~ 2830203 (-)
trnaf-gaa_29 NA other upstream 352355 2837283 ~ 2837354 (-)
trnap-ugg_7 NA other upstream 353313 2838241 ~ 2838312 (-)
trnaf-gaa_30 NA other upstream 353919 2838847 ~ 2838919 (-)

Expression


Co-expression Network