LOC122354491 (gata2a,gata2,LOC107680419,LOC107744843,LOC107573143)


Basic Information

Item Value
gene id LOC122354491
gene name gata2a,gata2,LOC107680419,LOC107744843,LOC107573143
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 2813352 ~ 2816128 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU116656
ATTAATGAGACTTCTCTCCGCTTCGGACAGCcgtagattttttttgtgtgtgtgagggggggAGAGTTTAACAATCGGGCTGTGGACAATTTAAACCAGTGGCGAATTACGAACGTCAGCAGACATCTTGAGGATTAACGTTCTTTTTGCAAGAGAACAGcacgggaaaaaataaaacttgggATCGCAGTGCTGAAATGCTGCTTTGCGCCGTGTTCCTGAGCGTTGCCGAAAGCGAAGGAGCCGGAGCTCTATTTCTCCAAAAATAAAGGCACGTGCGAAAAGCGAATAGGGAATCGCCAGCTGCGGCAGTAAACTCACGAGATAcacgttttaattatttaaaggaCCGCGGTGTCGCTCCTGGGTCTGTTAGCGACCGAAAGGTTTTCAAGTAGACGTCTAGAAAACAAAACTTCCCGAAACATTTTTTCGGAGCGCGGACGATCTAGACATGGAGGTTGCGGCCGATCAGTCTCGATGGATGGCCCATCATCACGCGGTACTCAACGGCCAGCACCCGGAGTCCCATCATCACGGGCTTACACACAATTACATGGAGCCCATGGCCCCTCTTCTGCCCCCGGACGAGGTGGATGTGTTCTTGAATCACTTGGACTCGCAGGGGAACCCTTACTACCCCAATTCTCGGGCTAGAGTATCATACGGACAAGCGCACGCTCGTCTCACGGGAAGTCAGGTCTGCCGACCACACCTCATACACAGTCCCGGTATTCCTTGGCTAGACAGCGGCAAGGCAGCGCTCTCCGCCGCCCACCACAACGCCTGGGCGGTCAGTCACTTCAGCAAGCCTGGCCTGCACCCCGCCAGCGCCGGTTACCCTTGCAGCAGCAGCTCCAGCACCGCTCCCGTCTCCTCCCTCACGTCCGCGACCCACTCCAGTCCACATCCCCTCTACAATTTCCCCCCGACCCCACCGAAAGACGTCTCGCCGGACCCCGGCCCTTCTTCTCCGACCTCCACCACTGCAAGAATGGACGAAAAGGAGTCCATCAAGTACCAAGTGTCCATCGCTGACGGGATGAAAATGGAGGGATGTAGCCCTCTTCGGGGAAGCCTGGCTATGAGCGCCCAAACACCGTCCACGCACCATCCCATCCCAACCTACCCGACGTACTCCCTCCCCGCGCCACACGAGTACGGCGGCGGTCTGTTTCATCCTGGTACCCTCCTCAGCGGATCCGCTTCAAGCTTCACACCTAAA
>XM_043252686.1
AGTACACAGGCGCAATTCATTAATGAGACTTCTCTCCGCTTCGGACAGCcgtagattttttttgtgtgtgtgagggggggAGAGTTTAACAATCGGGCTGTGGACAATTTAAACCAGTGGCGAATTACGAACGTCAGCAGACATCTTGAGGATTAACGTTCTTTTTGCAAGAGAACAGcacgggaaaaaataaaacttgggATCGCAGTGCTGAAATGCTGCTTTGCGCCGTGTTCCTGAGCGTTGCCGAAAGCGAAGGAGCCGGAGCTCTATTTCTCCAAAAATAAAGGCACGTGCGAAAAGCGAATAGGGAATCGCCAGCTGCGGCAGTAAACTCACGAGATAcacgttttaattatttaaaggaCCGCGGTGTCGCTCCTGGGTCTGTTAGCGACCGAAAGGTTTTCAAGTAGACGTCTAGAAAACAAAACTTCCCGAAACATTTTTTCGGAGCGCGGACGATCTAGACATGGAGGTTGCGGCCGATCAGTCTCGATGGATGGCCCATCATCACGCGGTACTCAACGGCCAGCACCCGGAGTCCCATCATCACGGGCTTACACACAATTACATGGAGCCCATGGCCCCTCTTCTGCCCCCGGACGAGGTGGATGTGTTCTTGAATCACTTGGACTCGCAGGGGAACCCTTACTACCCCAATTCTCGGGCTAGAGTATCATACGGACAAGCGCACGCTCGTCTCACGGGAAGTCAGGTCTGCCGACCACACCTCATACACAGTCCCGGTATTCCTTGGCTAGACAGCGGCAAGGCAGCGCTCTCCGCCGCCCACCACAACGCCTGGGCGGTCAGTCACTTCAGCAAGCCTGGCCTGCACCCCGCCAGCGCCGGTTACCCTTGCAGCAGCAGCTCCAGCACCGCTCCCGTCTCCTCCCTCACGTCCGCGACCCACTCCAGTCCACATCCCCTCTACAATTTCCCCCCGACCCCACCGAAAGACGTCTCGCCGGACCCCGGCCCTTCTTCTCCGACCTCCACCACTGCAAGAATGGACGAAAAGGAGTCCATCAAGTACCAAGTGTCCATCGCTGACGGGATGAAAATGGAGGGATGTAGCCCTCTTCGGGGAAGCCTGGCTATGAGCGCCCAAACACCGTCCACGCACCATCCCATCCCAACCTACCCGACGTACTCCCTCCCCGCGCCACACGAGTACGGCGGCGGTCTGTTTCATCCTGGTACCCTCCTCAGCGGATCCGCTTCAAGCTTCACACCTAAATGCAAAAGCAAGACGCGGTCGTGCTCAGGTGAGTTTCATTAGCTCTGACCCGACCACGAAGTGTAGCAAGAAAAGCACGTTTTAGAGAATGCCAAGGAAGTTATACTTATAAAAGACAGTTAAACGTGGTCAAATACAAGGCGTCCTGAAAAA
>XM_043252687.1
AGTACACAGGCGCAATTCATTAATGAGACTTCTCTCCGCTTCGGACAGCcgtagattttttttgtgtgtgtgagggggggAGAGTTTAACAATCGGGCTGTGGACAATTTAAACCAGTGGCGAATTACGAACGTCAGCAGACATCTTGAGGATTAACGTTCTTTTTGCAAGAGAACAGcacgggaaaaaataaaacttgggATCGCAGTGCTGAAATGCTGCTTTGCGCCGTGAGTGTTCCTGAGCGTTGCCGAAAGCGAAGGAGCCGGAGCTCTATTTCTCCAAAAATAAAGGCACGTGCGAAAAGCGAATAGGGAATCGCCAGCTGCGGCAGTAAACTCACGAGATAcacgttttaattatttaaaggaCCGCGGTGTCGCTCCTGGGTCTGTTAGCGACCGAAAGGTTTTCAAGTAGACGTCTAGAAAACAAAACTTCCCGAAACATTTTTTCGGAGCGCGGACGATCTAGACATGGAGGTTGCGGCCGATCAGTCTCGATGGATGGCCCATCATCACGCGGTACTCAACGGCCAGCACCCGGAGTCCCATCATCACGGGCTTACACACAATTACATGGAGCCCATGGCCCCTCTTCTGCCCCCGGACGAGGTGGATGTGTTCTTGAATCACTTGGACTCGCAGGGGAACCCTTACTACCCCAATTCTCGGGCTAGAGTATCATACGGACAAGCGCACGCTCGTCTCACGGGAAGTCAGGTCTGCCGACCACACCTCATACACAGTCCCGGTATTCCTTGGCTAGACAGCGGCAAGGCAGCGCTCTCCGCCGCCCACCACAACGCCTGGGCGGTCAGTCACTTCAGCAAGCCTGGCCTGCACCCCGCCAGCGCCGGTTACCCTTGCAGCAGCAGCTCCAGCACCGCTCCCGTCTCCTCCCTCACGTCCGCGACCCACTCCAGTCCACATCCCCTCTACAATTTCCCCCCGACCCCACCGAAAGACGTCTCGCCGGACCCCGGCCCTTCTTCTCCGACCTCCACCACTGCAAGAATGGACGAAAAGGAGTCCATCAAGTACCAAGTGTCCATCGCTGACGGGATGAAAATGGAGGGATGTAGCCCTCTTCGGGGAAGCCTGGCTATGAGCGCCCAAACACCGTCCACGCACCATCCCATCCCAACCTACCCGACGTACTCCCTCCCCGCGCCACACGAGTACGGCGGCGGTCTGTTTCATCCTGGTACCCTCCTCAGCGGATCCGCTTCAAGCTTCACACCTAAATGCAAAAGCAAGACGCGGTCGTGCTCAGGTGAGTTTCATTAGCTCTGACCCGACCACGAAGTGTAGCAAGAAAAGCACGTTTTAGAGAATGCCAAGGAAGTTATACTTATAAAAGACAGTTAAACGTGGTCAAATACAAGGCGTCCTGAAAAA

Function

symbol description
gata2a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within animal organ development and dorsal aorta morphogenesis. Predicted to be located in nucleus. Is expressed in several structures, including hematopoietic system; mesoderm; nervous system; neural tube; and trunk vasculature. Human ortholog(s) of this gene implicated in acute myeloid leukemia; immunodeficiency 21; mental depression; myelodysplastic syndrome; and myeloid leukemia. Orthologous to human GATA2 (GATA binding protein 2).
gata2 Enables several functions, including C2H2 zinc finger domain binding activity; DNA-binding transcription factor activity, RNA polymerase II-specific; and chromatin binding activity. Involved in several processes, including negative regulation of endothelial cell apoptotic process; positive regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis; and regulation of gene expression. Acts upstream of or within negative regulation of Notch signaling pathway; negative regulation of neural precursor cell proliferation; and positive regulation of angiogenesis. Located in cytoplasm and nucleoplasm. Implicated in acute myeloid leukemia; immunodeficiency 21; mental depression; myelodysplastic syndrome; and myeloid leukemia. Biomarker of acute myeloid leukemia; aplastic anemia; clear cell renal cell carcinoma; immunodeficiency 21; and myelodysplastic syndrome.

NR:

description
PREDICTED: GATA-binding factor 2-like isoform X1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0048821 erythrocyte development biological_process
GO:0003190 atrioventricular valve formation biological_process
GO:0060215 primitive hemopoiesis biological_process
GO:0035912 dorsal aorta morphogenesis biological_process
GO:0045637 regulation of myeloid cell differentiation biological_process
GO:0021514 ventral spinal cord interneuron differentiation biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU116656 False 1225 TUCP 0.56 3 2813505 2816110
XM_043252686.1 False 1396 mRNA 0.54 3 2813352 2816128
XM_043252687.1 True 1400 mRNA 0.54 3 2813352 2816128

Neighbor

gene id symbol gene type direction distance location
LOC122354490 gata1a,LOC107727848,LOC107581944,LOC107685680,LOC107655033,LOC107749468 coding downstream 1988 2807984 ~ 2811364 (-)
trnai-aau_28 NA coding downstream 26406 2786874 ~ 2786946 (-)
trnaf-gaa_28 NA coding downstream 26565 2786710 ~ 2786787 (-)
trnaf-gaa_27 NA coding downstream 28132 2785148 ~ 2785220 (-)
trnap-cgg_6 NA coding downstream 28738 2784543 ~ 2784614 (-)
camk1b LOC107714490,LOC107566450,LOC107680448,LOC107572399 coding upstream 180371 2996499 ~ 3037108 (-)
gnl3 gnl3,LOC107714492,LOC107680445,LOC107566445 coding upstream 236568 3052696 ~ 3058430 (-)
LOC122354702 NA coding upstream 239569 3055697 ~ 3055773 (-)
si:dkey-33m11.8 si:dkey-33m11.8,LOC107555995,LOC107699328,LOC107751009,LOC108436238 coding upstream 440751 3256879 ~ 3264114 (-)
pusl1 NA coding upstream 469833 3285961 ~ 3299062 (-)
LOC122354391 NA non-coding downstream 13324 2799533 ~ 2800028 (-)
G78774 NA non-coding downstream 18056 2795022 ~ 2795296 (-)
G78773 NA non-coding downstream 112623 2700513 ~ 2700729 (-)
G78771 NA non-coding downstream 115880 2697228 ~ 2697472 (-)
G78769 NA non-coding downstream 116655 2696409 ~ 2696697 (-)
G78848 rpn1,LOC107714495,LOC107699351,LOC107573146,LOC107680451 non-coding upstream 262886 3079014 ~ 3079668 (-)
G78854 NA non-coding upstream 298169 3114297 ~ 3114570 (-)
G78899 LOC107556004,LOC107699348,LOC107714497 non-coding upstream 407607 3223735 ~ 3241319 (-)
G78903 NA non-coding upstream 414999 3231127 ~ 3232742 (-)
G78918 LOC107751023,LOC107680412,LOC107555990,LOC107699319,LOC107714481 non-coding upstream 450056 3266184 ~ 3266672 (-)
nab2 nab2,LOC107557549,LOC107730902,LOC107696037,LOC107683651,LOC107737369 other downstream 1097223 1704624 ~ 1716129 (-)
LOC122354408 LOC107683642,LOC107737350,LOC107572058 other downstream 1116565 1588704 ~ 1696787 (-)
phactr3b phactr3b,LOC107730624,LOC107670936,LOC107722000,LOC107654794,LOC107550338,LOC103365918,LOC106955159,LOC104947949 other downstream 1553262 1217219 ~ 1260090 (-)
LOC122353728 NA other downstream 1838565 972954 ~ 974787 (-)
G78195 atp2b2,slc6a1b,slc6a1,LOC107561799,LOC107570616,LOC107670967,LOC107746710,LOC107570615,LOC107697564 other downstream 2019216 599107 ~ 794136 (-)
LOC122354336 srpk2,srpk1b,LOC108428417,LOC107714507,LOC107699336 other upstream 3460 2819588 ~ 2830203 (-)
trnaf-gaa_29 NA other upstream 21155 2837283 ~ 2837354 (-)
trnap-ugg_7 NA other upstream 22113 2838241 ~ 2838312 (-)
trnaf-gaa_30 NA other upstream 22719 2838847 ~ 2838919 (-)
trnap-cgg_7 NA other upstream 23683 2839811 ~ 2839881 (-)

Expression


Co-expression Network