spcs1 (spcs1,LOC107566449,LOC107714491,LOC107680421,LOC107699355,LOC107744856,LOC107572401)


Basic Information

Item Value
gene id spcs1
gene name spcs1,LOC107566449,LOC107714491,LOC107680421,LOC107699355,LOC107744856,LOC107572401
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 3046738 ~ 3048224 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU116673
ATACGTACACACTTTCAAACAGGAAACCGTCATTCTCTTCTCAATAATATTATccagcagttttattttataatctcAAAATGCTTTCAGCGTTTAAATCCATTCCGACACACATGGACTATAAAGGACAGAAACTCGCAGAGCAAATTTTCCAAGGAATCATTCTGGTGTCTGCGGTGATCGGCTTCATATACGGCTTTTCCATTCAGCAGTTTGGGTGGACAGTTTACATAATGTTGGCTGGATTCACAATATCATGTCTGCTCACCCTGCCTCCCTGGCCAATGTACAGAAAAAGTCCTTTAACCTGGCAGCCGGCTTTGCCTGAGACGTCTGGAGAAAATCGCGACAAGCCTCAAGAGagtcagaagaagaagaagcacaAGTGATGCACGGCGGTATTTCGGTTGGCACAGCAAAGCCATATAGAAACCAACCAATGGAAAACCTTTTCGTTTTTGTCACCGTTTGAAcattcaatatataataaagaacAG
>XM_043251707.1
ataacTGCACACAGACTGCTTTGGgtgcttattatttttttatgtaaagccCCATTTGCACTAACAGATTTAATATTCTTTCAAAAGACGTTTTTTTCCTACTGTGCCGTGCATTTCAGACACATTTTCGCCCAGgagatgtttttgaaagggGTCCTGCGGATCTATACGTACACACTTTCAAACAGGAAACCGTCATTCTCTTCTCAATAATATTATccagcagttttattttataatctcAAAATGCTTTCAGCGTTTAAATCCATTCCGACACACATGGACTATAAAGGACAGAAACTCGCAGAGCAAATTTTCCAAGGAATCATTCTGGTGTCTGCGGTGATCGGCTTCATATACGGCTTTTCCATTCAGCAGTTTGGGTGGACAGTTTACATAATGTTGGCTGGATTCACAATATCATGTCTGCTCACCCTGCCTCCCTGGCCAATGTACAGAAAAAGTCCTTTAACCTGGCAGCCGGCTTTGCCTGAGACGTCTGGAGAAAATCGCGACAAGCCTCAAGAGagtcagaagaagaagaagcacaAGTGATGCACGGCGGTATTTCGGTTGGCACAGCAAAGCCATATAGAAACCAACCAATGGAAAACCTTTTCGTTTTTGTCACCGTTTGAAcattcaatatataataaagaacAGCTTTTGGTA

Function

symbol description
spcs1 Predicted to be involved in protein targeting to ER and signal peptide processing. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be part of signal peptidase complex. Predicted to be integral component of endoplasmic reticulum membrane. Orthologous to human SPCS1 (signal peptidase complex subunit 1).

NR:

description
signal peptidase complex subunit 1-like

GO:

id name namespace
GO:0006465 signal peptide processing biological_process
GO:0005787 signal peptidase complex cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008233 peptidase activity molecular_function

KEGG:

id description
K12946 SPCS1; signal peptidase complex subunit 1

RNA

RNA id representative length rna type GC content exon number start site end site
TU116673 False 497 TUCP 0.42 4 3046747 3048058
XM_043251707.1 True 672 mRNA 0.41 4 3046738 3048224

Neighbor

gene id symbol gene type direction distance location
camk1b LOC107714490,LOC107566450,LOC107680448,LOC107572399 coding downstream 9630 2996499 ~ 3037108 (-)
LOC122354490 gata1a,LOC107727848,LOC107581944,LOC107685680,LOC107655033,LOC107749468 coding downstream 235374 2807984 ~ 2811364 (-)
trnai-aau_28 NA coding downstream 259792 2786874 ~ 2786946 (-)
trnaf-gaa_28 NA coding downstream 259951 2786710 ~ 2786787 (-)
trnaf-gaa_27 NA coding downstream 261518 2785148 ~ 2785220 (-)
gnl3 gnl3,LOC107714492,LOC107680445,LOC107566445 coding upstream 4472 3052696 ~ 3058430 (-)
LOC122354702 NA coding upstream 7473 3055697 ~ 3055773 (-)
si:dkey-33m11.8 si:dkey-33m11.8,LOC107555995,LOC107699328,LOC107751009,LOC108436238 coding upstream 208655 3256879 ~ 3264114 (-)
pusl1 NA coding upstream 237737 3285961 ~ 3299062 (-)
si:ch211-160o17.6 LOC107699340,LOC107714505,LOC107555993 coding upstream 333261 3381485 ~ 3385791 (-)
LOC122354391 NA non-coding downstream 246710 2799533 ~ 2800028 (-)
G78774 NA non-coding downstream 251442 2795022 ~ 2795296 (-)
G78773 NA non-coding downstream 346009 2700513 ~ 2700729 (-)
G78771 NA non-coding downstream 349266 2697228 ~ 2697472 (-)
G78769 NA non-coding downstream 350041 2696409 ~ 2696697 (-)
G78848 rpn1,LOC107714495,LOC107699351,LOC107573146,LOC107680451 non-coding upstream 30790 3079014 ~ 3079668 (-)
G78854 NA non-coding upstream 66073 3114297 ~ 3114570 (-)
G78899 LOC107556004,LOC107699348,LOC107714497 non-coding upstream 175511 3223735 ~ 3241319 (-)
G78903 NA non-coding upstream 182903 3231127 ~ 3232742 (-)
G78918 LOC107751023,LOC107680412,LOC107555990,LOC107699319,LOC107714481 non-coding upstream 217960 3266184 ~ 3266672 (-)
trnai-aau_68 NA other downstream 60207 2986458 ~ 2986531 (-)
trnaf-aaa NA other downstream 61621 2985044 ~ 2985117 (-)
trnap-cgg_28 NA other downstream 62389 2984278 ~ 2984349 (-)
trnai-aau_67 NA other downstream 63195 2983470 ~ 2983543 (-)
trnaf-gaa_80 NA other downstream 63355 2983312 ~ 2983383 (-)
G78853 gata2a,gata2,LOC107714496 other upstream 64709 3112933 ~ 3113692 (-)
cdab cda,LOC107714500,LOC107751011,LOC107572847,LOC107680435,LOC108436250,LOC105898129 other upstream 205639 3253863 ~ 3256212 (-)
G79003 NA other upstream 491777 3540001 ~ 3541055 (-)
LOC122354343 cpne5b,LOC107680428,LOC107714485,LOC107555996,LOC107699334,LOC107751002,LOC108436414 other upstream 765281 3813505 ~ 3834923 (-)
G79085 zgc:113223,LOC107745344,LOC107698001,LOC107556176 other upstream 865024 3913248 ~ 3914635 (-)

Expression


Co-expression Network