G78853 (gata2a,gata2,LOC107714496)


Basic Information

Item Value
gene id G78853
gene name gata2a,gata2,LOC107714496
gene type unknown
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 3112933 ~ 3113692 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU116704
TAAACTTAGTggtcttctctctttctttgacTCCCGAGAGTCAGAGCGAGTCCGTAACCAGAGAGTTTCTGAGAAGGAACTGCCACGCAGTGAATCTGCAAAGACACATCCTCTCTTTCAGGACAGTACCAAAGTGACTCAGTAAAACGTAACGAAAAGCTAAAAGCAAAGAtagctctctctccctctgctCCGTCCGTGAAGGTCCTCAGTGTCTGAAAAGGGAGAGGCGCTTCTTAAAACGCGCAAACCGTCCTCTATACAAGCTGACGTGGTTGTCGATGAGATGACACCTTCCTCTGCGGTGTCCCAAGCGGGAACGAGACCCCTTCGCGTCCCTCACCTATGGAAGGTTTCGTTACGGGAGGAGGAGGGGAGGGCGAGAGCGAGCGCCGGGTCTTCAGTGAGGTTCGGCCCAGGCGGGAGAGCGGCTGGAGTGGTGAGGGTGGCTGAATGTGGGGTGGATGGGAGTCGGAGTGGGCAGCATGTGTCCGGAATGGCTGAACGGTGGCAGGTGGCCCATGTGTGGCATGTGGCTCGCCAGAGCGCTGGCGCTGCCAAACGGAGAGGTCTTGTCCTGCATGCACTTGGAGAGCTCCTCGAAACCCTCGCCAGATCGTTTACTCCTCTTGGACTTGCTGGACATCTTTCGGTTGCGTGTTTGGATGCCTTCTTTTTTCATGGTCAGCGGCCTG

Function

symbol description
gata2a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within animal organ development and dorsal aorta morphogenesis. Predicted to be located in nucleus. Is expressed in several structures, including hematopoietic system; mesoderm; nervous system; neural tube; and trunk vasculature. Human ortholog(s) of this gene implicated in acute myeloid leukemia; immunodeficiency 21; mental depression; myelodysplastic syndrome; and myeloid leukemia. Orthologous to human GATA2 (GATA binding protein 2).
gata2 Enables several functions, including C2H2 zinc finger domain binding activity; DNA-binding transcription factor activity, RNA polymerase II-specific; and chromatin binding activity. Involved in several processes, including negative regulation of endothelial cell apoptotic process; positive regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis; and regulation of gene expression. Acts upstream of or within negative regulation of Notch signaling pathway; negative regulation of neural precursor cell proliferation; and positive regulation of angiogenesis. Located in cytoplasm and nucleoplasm. Implicated in acute myeloid leukemia; immunodeficiency 21; mental depression; myelodysplastic syndrome; and myeloid leukemia. Biomarker of acute myeloid leukemia; aplastic anemia; clear cell renal cell carcinoma; immunodeficiency 21; and myelodysplastic syndrome.

NR:

description
zg2, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU116704 True 695 TUCP 0.56 2 3112933 3113692

Neighbor

gene id symbol gene type direction distance location
gnl3 gnl3,LOC107714492,LOC107680445,LOC107566445 coding downstream 54503 3052696 ~ 3058430 (-)
LOC122354702 NA coding downstream 57160 3055697 ~ 3055773 (-)
camk1b LOC107714490,LOC107566450,LOC107680448,LOC107572399 coding downstream 75825 2996499 ~ 3037108 (-)
LOC122354490 gata1a,LOC107727848,LOC107581944,LOC107685680,LOC107655033,LOC107749468 coding downstream 301569 2807984 ~ 2811364 (-)
trnai-aau_28 NA coding downstream 325987 2786874 ~ 2786946 (-)
si:dkey-33m11.8 si:dkey-33m11.8,LOC107555995,LOC107699328,LOC107751009,LOC108436238 coding upstream 143187 3256879 ~ 3264114 (-)
pusl1 NA coding upstream 172269 3285961 ~ 3299062 (-)
si:ch211-160o17.6 LOC107699340,LOC107714505,LOC107555993 coding upstream 267793 3381485 ~ 3385791 (-)
lhfpl5a lhfpl5a,LOC107592561,LOC107680427,LOC108435128,LOC108254808,LOC108246860 coding upstream 340718 3454410 ~ 3456934 (-)
LOC122354690 NA coding upstream 565070 3678762 ~ 3678926 (-)
G78848 rpn1,LOC107714495,LOC107699351,LOC107573146,LOC107680451 non-coding downstream 33265 3079014 ~ 3079668 (-)
LOC122354391 NA non-coding downstream 312905 2799533 ~ 2800028 (-)
G78774 NA non-coding downstream 317637 2795022 ~ 2795296 (-)
G78773 NA non-coding downstream 412204 2700513 ~ 2700729 (-)
G78771 NA non-coding downstream 415461 2697228 ~ 2697472 (-)
G78854 NA non-coding upstream 605 3114297 ~ 3114570 (-)
G78899 LOC107556004,LOC107699348,LOC107714497 non-coding upstream 110043 3223735 ~ 3241319 (-)
G78903 NA non-coding upstream 117435 3231127 ~ 3232742 (-)
G78918 LOC107751023,LOC107680412,LOC107555990,LOC107699319,LOC107714481 non-coding upstream 152492 3266184 ~ 3266672 (-)
G78919 NA non-coding upstream 153064 3266756 ~ 3267675 (-)
spcs1 spcs1,LOC107566449,LOC107714491,LOC107680421,LOC107699355,LOC107744856,LOC107572401 other downstream 64709 3046738 ~ 3048224 (-)
trnai-aau_68 NA other downstream 126402 2986458 ~ 2986531 (-)
trnaf-aaa NA other downstream 127816 2985044 ~ 2985117 (-)
trnap-cgg_28 NA other downstream 128584 2984278 ~ 2984349 (-)
trnai-aau_67 NA other downstream 129390 2983470 ~ 2983543 (-)
cdab cda,LOC107714500,LOC107751011,LOC107572847,LOC107680435,LOC108436250,LOC105898129 other upstream 140171 3253863 ~ 3256212 (-)
G79003 NA other upstream 426309 3540001 ~ 3541055 (-)
LOC122354343 cpne5b,LOC107680428,LOC107714485,LOC107555996,LOC107699334,LOC107751002,LOC108436414 other upstream 699813 3813505 ~ 3834923 (-)
G79085 zgc:113223,LOC107745344,LOC107698001,LOC107556176 other upstream 799556 3913248 ~ 3914635 (-)
si:dkey-197i20.6 si:dkey-197i20.6,LOC107745350,LOC107710445,LOC107658773,LOC107669007,LOC107592569 other upstream 848289 3961981 ~ 3965791 (-)

Expression


Co-expression Network