G78854


Basic Information

Item Value
gene id G78854
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 3114297 ~ 3114570 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU116705
CTTTCTCTCCCACCAAAAAACTTGCTGTCCTTTTGCTTACTTTTCCTTTGGCTCCAGAAAGACAAGCCAAAAGCGAGGGGGTTGAGTGGGTCAGATGAAAAGAAGGACACGGGGACAACAACTTCGTCCGTCTAAAAGCAGTCCGTACAGTATGGCTCTACGCATTTGCATGTGATTGGAACCCTCCCAATGTTTGGAGACTGTTGTCTGGGTCAACCCGAAGCACCCCGGGGGGGCTTATATGCCACAGAGGTCTCCTTCTTTCCCCGGTCGG

Function

GO:

id name namespace
GO:0021514 ventral spinal cord interneuron differentiation biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU116705 True 274 lncRNA 0.51 1 3114297 3114570

Neighbor

gene id symbol gene type direction distance location
gnl3 gnl3,LOC107714492,LOC107680445,LOC107566445 coding downstream 55867 3052696 ~ 3058430 (-)
LOC122354702 NA coding downstream 58524 3055697 ~ 3055773 (-)
camk1b LOC107714490,LOC107566450,LOC107680448,LOC107572399 coding downstream 77189 2996499 ~ 3037108 (-)
LOC122354490 gata1a,LOC107727848,LOC107581944,LOC107685680,LOC107655033,LOC107749468 coding downstream 302933 2807984 ~ 2811364 (-)
trnai-aau_28 NA coding downstream 327351 2786874 ~ 2786946 (-)
si:dkey-33m11.8 si:dkey-33m11.8,LOC107555995,LOC107699328,LOC107751009,LOC108436238 coding upstream 142309 3256879 ~ 3264114 (-)
pusl1 NA coding upstream 171391 3285961 ~ 3299062 (-)
si:ch211-160o17.6 LOC107699340,LOC107714505,LOC107555993 coding upstream 266915 3381485 ~ 3385791 (-)
lhfpl5a lhfpl5a,LOC107592561,LOC107680427,LOC108435128,LOC108254808,LOC108246860 coding upstream 339840 3454410 ~ 3456934 (-)
LOC122354690 NA coding upstream 564192 3678762 ~ 3678926 (-)
G78848 rpn1,LOC107714495,LOC107699351,LOC107573146,LOC107680451 non-coding downstream 34629 3079014 ~ 3079668 (-)
LOC122354391 NA non-coding downstream 314269 2799533 ~ 2800028 (-)
G78774 NA non-coding downstream 319001 2795022 ~ 2795296 (-)
G78773 NA non-coding downstream 413568 2700513 ~ 2700729 (-)
G78771 NA non-coding downstream 416825 2697228 ~ 2697472 (-)
G78899 LOC107556004,LOC107699348,LOC107714497 non-coding upstream 109165 3223735 ~ 3241319 (-)
G78903 NA non-coding upstream 116557 3231127 ~ 3232742 (-)
G78918 LOC107751023,LOC107680412,LOC107555990,LOC107699319,LOC107714481 non-coding upstream 151614 3266184 ~ 3266672 (-)
G78919 NA non-coding upstream 152186 3266756 ~ 3267675 (-)
G78969 NA non-coding upstream 298304 3412874 ~ 3414924 (-)
G78853 gata2a,gata2,LOC107714496 other downstream 605 3112933 ~ 3113692 (-)
spcs1 spcs1,LOC107566449,LOC107714491,LOC107680421,LOC107699355,LOC107744856,LOC107572401 other downstream 66073 3046738 ~ 3048224 (-)
trnai-aau_68 NA other downstream 127766 2986458 ~ 2986531 (-)
trnaf-aaa NA other downstream 129180 2985044 ~ 2985117 (-)
trnap-cgg_28 NA other downstream 129948 2984278 ~ 2984349 (-)
cdab cda,LOC107714500,LOC107751011,LOC107572847,LOC107680435,LOC108436250,LOC105898129 other upstream 139293 3253863 ~ 3256212 (-)
G79003 NA other upstream 425431 3540001 ~ 3541055 (-)
LOC122354343 cpne5b,LOC107680428,LOC107714485,LOC107555996,LOC107699334,LOC107751002,LOC108436414 other upstream 698935 3813505 ~ 3834923 (-)
G79085 zgc:113223,LOC107745344,LOC107698001,LOC107556176 other upstream 798678 3913248 ~ 3914635 (-)
si:dkey-197i20.6 si:dkey-197i20.6,LOC107745350,LOC107710445,LOC107658773,LOC107669007,LOC107592569 other upstream 847411 3961981 ~ 3965791 (-)

Expression


Co-expression Network