G78886


Basic Information

Item Value
gene id G78886
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 3288201 ~ 3291400 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU116746
atttaggcaAATTAAGAGACACATCCTTATGTTTTCATGTCCGACACCAAGAGAAAGATGTTAACTAGCATTGTGATTAATCCTAACATCTGTTAGGCTAATGCTAACTAGCCAGACCTTGACCCTTTATATAAGCATATcttgtttcacaaaaaaataatccgCAGGGTTACCTcataaacttgtttttttcccatataACCATATTTTTCTACTTTCAGTGGCCATGTGATCCTTTTAATGAATATTAGCCTATTGTGGAGAAACATCAGATCTCATTTACTGTGactaaacaaacatttcatatCTAACGTATTCCTTTTCAAAAATTCTATTTAtctatacatttttctaaaaatgatatTGGTCTATATAGGACCACGAAAACACTTGTTTTGCATTTGATCAGGGTTCGATGCAGACGTTCAGTGTGTGTGCTGGTACGTATGATTTATGAGGACACGAgtgtgtataatgacatgggtgCTACAACATAAACACGGTTTACGAGGACATTTTctgtcttaaaacaaaaaaaggcttaaaaaccataaaaacagtgttttataaaatgaaaaacatgctAGTAGGTTCCTGTAATAGTAAGGGTTAGGTGTGGGGAGACTGagaatacagtttgtacagtataataacCATTATGGCTATagagagtccccataaaccacaaacgtgtgtgtgcgtgtgtgtggatGATAAATGCAGTTGATCCCCTGCAGATCTTGACATTAGTGTGAAACAGAgcagatggtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagtatgtgtgtgtgtgtgtgagtgtgtgtgagtgtgtgtgtcctgacAGCTTAGAGCTGCATGTGAAAAACCCAAAATGATCTGTCGAAGGGATCCCAGTGTGTGTTGGTTTCAAACAATAGTCTGAAGATTTGATAATTCGATAGGAGGAGCCTGATTCGATTCCCAAACCTAGTTatgattttgccattttggCTATATGAGGGTGCCTAAATGTCTAATTTCACATAAAACTACCAGTTTTCTCCCAATAGGTTAATACACGGTCTATTAAGATAATGCTGTACATAaaaacctgagaaaaaaaagaagctttattaataatattttaagaaaagtcAAGCTGATAAAAGCAGAGTAACCTTTTTTTCAACACATTTCAGccattgtacatatatattgtgtatatattatgtcatataaaatgcatttaattgagtTACGCTGCAGTAAAGCGCTTCACTGTAGTATGTGATTATCTCTTTAGCGGAGCTCAAATTAATACATTCATAAATAGAGTATGCATAGCGTTATAATGAGAGcactattataaaaaatgttgtgaATTATTAGGGTTTTGCTGACGTCCAATGTTGACTAtcctatttttttataaaaaaataaaacattatatatgtataacatgGCCACAAACATAACTGTCGACAAGATTAGAAAATTCCAGTTTGACCATATTTTTAACAGATAAAaccaattttgaaaaaataattattgtttatatgaCTGTTATAACACTAAAATTaagagttaaaataaaaagaattcatatatattatattcacaaagcattttttttaatgcttttgtaaGAAGTCTCTTACGTATGTCCAACGTTGCATATCTATTTTCTACtgtaatatactttaaaatgtaatttataccaTTGATGCAAATCTGAAATTTCAgcagcattactccagtcacgtgatctttcagaaatcattttaatatgctgatttgctgctaaagaagcatttctgattattataattatgaaaacTTCTCATTTTTGTGAAACCCATAATACAATAATtccaagggtttttttttaaatgaataaaaagttcaagagaacagcatttattttaaatagaaatgtctTGACTGTTACTTTtggatcattttaatgcatctttgctgaataaaagctaTTAGCGATAGTGTGCAGGATGCATCTCAAATCTATAGTTTTTGTGactataatattgttttcttcagAACGCTGATGTGGACAGTATTAAAAAACAGCCATTCTTTACCTCGTCTGACAAGCTGCAGTGTCTGTCCCTCAGTCGAGGACGAAAAAGAATAAGCAGCCCGCTTTTGTCAACATCGTGCTTCGCTCCGACATCTGTTGCCTAGCAACAGTCTCACTGCACAACTGAAGAGACGACTGATGAAACACCAGCCTCAAAGACCGGACATCCATTGTGCTATAAACTGCTTCGCCTTTCATACAGTGCGTTTGCATTTACTACTTCATCTACTTCATGTTAAATCACGTACACATTCTTTTAGCTGGCAACGATCAGTGGTTCAAGAGCATAAGGTTTACTGCGTGAAGCTATAATTAGGGTTATTAACAGCCGAGAGGGTTTATGGCTGGATAAGGAATTTATATCAGCAGCTATTGACAGCTTGTTGTAATTGCGGATCCATTAATCGGCGATTGGACAAGCTCTGGCCTTGATGTTCAGCCATATATCCTTCTAGGAAATCTGAGGCTATTTATATGCTCTCGTGACTCCACATTTGCTCACTTAATCCGTCAACACGCTGTAGAAAagtggcaatgaaatgcattaaccAAATGACATAATTAAATCATGTGAATTGTGGGATAAACTGcacttaattattcattttagaaatatattactgaTTTGTGACCGACCATTATATCGACCAGGCCAATTAATCTGATACTATGTATTTAGTTAACAGAGAATGTAGagtaaaatgaatcattttatgaaatgaatGCCTCATGTTAAATTCACTATGGCAGGTAAACTGATAAATGTCCGTCGTGATGAACCCCCATATTAAACTAGGCTTCCTCTAATCTCTAGCAAGACGTATTCCTACCTGTAAAAGTGTCTCTGGCTGAACGAGACCCCAGGTTCCAGCTGGATCTGATCTAGGGTCTTCACTGGGTTCTTCAAGTGCATATCTGCGCTCGAGGCACGGAAGGTGCTGAAGTCGTGGGTTCCTAACAGCAGTGATGCAGCCTCTTGCATTGCGTTGATATCGAGAGTCCTGCGGGCACCAAGGAGTATCAAACTCTGCAGTAACTGCAGTCGAAAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU116746 True 3128 lncRNA 0.36 2 3288201 3291400

Neighbor

gene id symbol gene type direction distance location
ddx19b ddx19,LOC107680447,LOC107572851,LOC107699345,LOC107556002,LOC108255077,LOC108411521,LOC107714482 coding upstream 2661 3278801 ~ 3285540 (+)
si:dkey-33m11.7 LOC107680412,LOC107555990,LOC107714481,LOC107699319,LOC107751023 coding upstream 20925 3263629 ~ 3267276 (+)
dnajc16l LOC107680433,LOC107714499,LOC107572849,LOC107556003 coding upstream 34352 3244829 ~ 3253849 (+)
itih3a.1 itih3a,LOC107714497,LOC107699348,LOC107556004 coding upstream 46942 3225810 ~ 3241259 (+)
itih3a.2 itih1,LOC107714498,LOC107699349,LOC107555992,LOC107744852,LOC107680411 coding upstream 62583 3212989 ~ 3225618 (+)
acap3b acap3b,LOC107714502,LOC107751006 coding downstream 8983 3300383 ~ 3356156 (+)
hipk1b si:ch211-160o17.4,hipk1,LOC107680439,LOC107714503,LOC107699342 coding downstream 70403 3361803 ~ 3377622 (+)
b3galt6 b3galt6,LOC107555998,LOC107714504,LOC107699339,LOC107592565,LOC107680432,LOC107751019 coding downstream 86685 3378085 ~ 3381338 (+)
mapk14b mapk14b,LOC107680431,LOC107714506,LOC107699338,LOC103028137,LOC104939458,LOC108436315 coding downstream 101383 3392783 ~ 3414919 (+)
srpk1b srpk1b,LOC107699336,LOC107714507,LOC107680449,LOC107592563,LOC107751004 coding downstream 123653 3415053 ~ 3452141 (+)
G78815 NA non-coding upstream 171771 3115425 ~ 3116430 (+)
G78797 NA non-coding upstream 285210 3001119 ~ 3002991 (+)
G78784 NA non-coding upstream 474919 2812377 ~ 2813282 (+)
G78772 NA non-coding upstream 587498 2700395 ~ 2700703 (+)
G78757 NA non-coding upstream 799648 2488214 ~ 2488553 (+)
G78898 NA non-coding downstream 100164 3391564 ~ 3391790 (+)
G79002 NA non-coding downstream 248588 3539988 ~ 3541069 (+)
G79021 NA non-coding downstream 410345 3701745 ~ 3702033 (+)
G79022 NA non-coding downstream 412841 3704241 ~ 3726091 (+)
LOC122353534 NA non-coding downstream 454693 3746093 ~ 3747491 (+)
camk2n1 si:dkey-33m11.6,LOC107572850,LOC107680422,LOC107555994,LOC107751034,LOC107714486,LOC107699327 other upstream 15582 3270199 ~ 3272619 (+)
G78790 NA other upstream 461407 2825539 ~ 2826794 (+)
G78763 NA other upstream 608059 2678135 ~ 2680142 (+)
G78506 inpp1,LOC107737355,LOC107683640,LOC107730897 other upstream 1562104 1644631 ~ 1726097 (+)
nabp2 si:ch73-190f16.2,nabp2,LOC107572067,LOC107557546,LOC107683643,LOC107675336,LOC107737367,LOC106565411 other upstream 1607001 1678226 ~ 1681200 (+)
LOC122353713 LOC107714487,LOC107555999 other downstream 66810 3358210 ~ 3361658 (+)
tmem167b tmem167b,LOC107592590,LOC107555997,LOC107699326 other downstream 94858 3386258 ~ 3391229 (+)
nwd1 nwd1,LOC107730478,LOC107710443,LOC107658741,LOC107592553,LOC107655543 other downstream 480155 3771555 ~ 3785342 (+)
trnaq-cug_17 NA other downstream 492564 3783964 ~ 3784035 (+)
LOC122354455 LOC107710444,LOC107658759,LOC107592584,LOC107745340,LOC107556194,LOC107698002,LOC107592552,LOC107710448,LOC107658524 other downstream 505006 3796406 ~ 3929528 (+)

Expression


Co-expression Network