cdab (cda,LOC107714500,LOC107751011,LOC107572847,LOC107680435,LOC108436250,LOC105898129)


Basic Information

Item Value
gene id cdab
gene name cda,LOC107714500,LOC107751011,LOC107572847,LOC107680435,LOC108436250,LOC105898129
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 3253863 ~ 3256212 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU116782
GAAGTAACAAGTCGACAACTTTTCGTTATTTCTCCTCATCAGGCTGTAACGTAGAAAACGCGTGCTTCAACCTGGGAATCTGTGCTGAGAGAACCGCCATCTCAAAAGCTGTATCAGAGGGCTACCGGGATTTCAAAGCCATTGCTATTGCGAGCGATATGTGCGAGCACTTTATTTCCCCCTGTGGCGGCTGCAGGCAATTCATGAGAGAGTTCGGAGCAAACTGGGACGTTTATTTGTCGAAACCTGACGGCTCCTATGTGGAGATGACTGTTGAAGAACTTCTGCCTGCATCTTTTGGTCCAGAAGACTTACAAATGAAGAAAGCGAATATTAGGAACGAGTTCTGAAGCACAGACTCTGGAAAGACTACCCGATAAGTCTTGCTTGTAGATAGAAAAAGGttataatgtatgtaaatgtgtacattttgtgcgattattttcaaataaaagtaaatacagtTATAAACGTAA
>XM_043252009.1
AGATCTGGGGAAAAGGGGATTGGATGCCAgatctgaaaaaataaagtcGCAGGCAAGTCTATTGTGCCACagaaacacaatacacacaaaGAACAGCAACATGGGCGATCAAAAGATGAGACGTGAGCTTTTTAAGGGGTTGAATGATCGCTTCTCTGGAATGAAAGAAGTGATTCGGAAATCCCTTGAGGCCAGGAAGTTTGCCTACTGCCCCTACAGCAAGTTCCGAGTCGGAGCGGCGCTCCTGACCCACGACGGCACGGTTTTCACAGGCTGTAACGTAGAAAACGCGTGCTTCAACCTGGGAATCTGTGCTGAGAGAACCGCCATCTCAAAAGCTGTATCAGAGGGCTACCGGGATTTCAAAGCCATTGCTATTGCGAGCGATATGTGCGAGCACTTTATTTCCCCCTGTGGCGGCTGCAGGCAATTCATGAGAGAGTTCGGAGCAAACTGGGACGTTTATTTGTCGAAACCTGACGGCTCCTATGTGGAGATGACTGTTGAAGAACTTCTGCCTGCATCTTTTGGTCCAGAAGACTTACAAATGAAGAAAGCGAATATTAGGAACGAGTTCTGAAGCACAGACTCTGGAAAGACTACCCGATAAGTCTTGCTTGTAGATAGAAAAAGGttataatgtatgtaaatgtgtacattttgtgcgattattttcaaataaaagtaaatacagtTATAAACGTAA

Function

symbol description
cda Enables several functions, including cytidine deaminase activity; protein homodimerization activity; and zinc ion binding activity. Involved in cytidine deamination; negative regulation of cell growth; and negative regulation of nucleotide metabolic process. Located in cytosol. Implicated in lung non-small cell carcinoma.

NR:

description
PREDICTED: cytidine deaminase

GO:

id name namespace
GO:0009972 cytidine deamination biological_process
GO:0008270 zinc ion binding molecular_function
GO:0004126 cytidine deaminase activity molecular_function

KEGG:

id description
K01489 cdd, CDA; cytidine deaminase

RNA

RNA id representative length rna type GC content exon number start site end site
TU116782 False 476 lncRNA 0.42 3 3253863 3254526
XM_043252009.1 True 706 mRNA 0.45 4 3253863 3256212

Neighbor

gene id symbol gene type direction distance location
gnl3 gnl3,LOC107714492,LOC107680445,LOC107566445 coding downstream 195433 3052696 ~ 3058430 (-)
LOC122354702 NA coding downstream 198090 3055697 ~ 3055773 (-)
camk1b LOC107714490,LOC107566450,LOC107680448,LOC107572399 coding downstream 216755 2996499 ~ 3037108 (-)
LOC122354490 gata1a,LOC107727848,LOC107581944,LOC107685680,LOC107655033,LOC107749468 coding downstream 442499 2807984 ~ 2811364 (-)
trnai-aau_28 NA coding downstream 466917 2786874 ~ 2786946 (-)
si:dkey-33m11.8 si:dkey-33m11.8,LOC107555995,LOC107699328,LOC107751009,LOC108436238 coding upstream 667 3256879 ~ 3264114 (-)
pusl1 NA coding upstream 29749 3285961 ~ 3299062 (-)
si:ch211-160o17.6 LOC107699340,LOC107714505,LOC107555993 coding upstream 125273 3381485 ~ 3385791 (-)
lhfpl5a lhfpl5a,LOC107592561,LOC107680427,LOC108435128,LOC108254808,LOC108246860 coding upstream 198198 3454410 ~ 3456934 (-)
LOC122354690 NA coding upstream 422550 3678762 ~ 3678926 (-)
G78899 LOC107556004,LOC107699348,LOC107714497 non-coding downstream 12544 3223735 ~ 3241319 (-)
G78903 NA non-coding downstream 21121 3231127 ~ 3232742 (-)
G78854 NA non-coding downstream 139293 3114297 ~ 3114570 (-)
G78848 rpn1,LOC107714495,LOC107699351,LOC107573146,LOC107680451 non-coding downstream 174195 3079014 ~ 3079668 (-)
LOC122354391 NA non-coding downstream 453835 2799533 ~ 2800028 (-)
G78918 LOC107751023,LOC107680412,LOC107555990,LOC107699319,LOC107714481 non-coding upstream 9972 3266184 ~ 3266672 (-)
G78919 NA non-coding upstream 10544 3266756 ~ 3267675 (-)
G78969 NA non-coding upstream 156662 3412874 ~ 3414924 (-)
G79010 NA non-coding upstream 398070 3654282 ~ 3657289 (-)
G79069 NA non-coding upstream 460477 3716689 ~ 3719414 (-)
G78853 gata2a,gata2,LOC107714496 other downstream 140171 3112933 ~ 3113692 (-)
spcs1 spcs1,LOC107566449,LOC107714491,LOC107680421,LOC107699355,LOC107744856,LOC107572401 other downstream 205639 3046738 ~ 3048224 (-)
trnai-aau_68 NA other downstream 267332 2986458 ~ 2986531 (-)
trnaf-aaa NA other downstream 268746 2985044 ~ 2985117 (-)
trnap-cgg_28 NA other downstream 269514 2984278 ~ 2984349 (-)
G79003 NA other upstream 283789 3540001 ~ 3541055 (-)
LOC122354343 cpne5b,LOC107680428,LOC107714485,LOC107555996,LOC107699334,LOC107751002,LOC108436414 other upstream 557293 3813505 ~ 3834923 (-)
G79085 zgc:113223,LOC107745344,LOC107698001,LOC107556176 other upstream 657036 3913248 ~ 3914635 (-)
si:dkey-197i20.6 si:dkey-197i20.6,LOC107745350,LOC107710445,LOC107658773,LOC107669007,LOC107592569 other upstream 705769 3961981 ~ 3965791 (-)
mmel1 mmel1,LOC107712974,LOC107756657,LOC107654428,LOC107702001,LOC107592889 other upstream 2482804 5739016 ~ 5765140 (-)

Expression


Co-expression Network