LOC122353534


Basic Information

Item Value
gene id LOC122353534
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 3746093 ~ 3747491 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU116969
TAAAACTCGGGTTCGCACGCTCTTTCTTCCCAGTTCCGTCTTCTTTGTGAGAGTATGGGGGCTGTTGGACCATGGCTCTTTCCTATAGCGCTTACTCCGATTTTGATCATACTGGAGCCTAATGGATGACCTGTGGAGTCTCCAAGACTCTTGAGTCTCTTGGAACTCCAAACCCGGAACAATTCTGTAATTCAAGAGGAACTTGCACCTTTTTGAATGGCCACACAAGTAAAACTGAGGTGTTTGAGCACTCTGTGCCGATGAAGACCCCCCTCAGAGCCAAGTGGCTGAAGTACACAGGCTTTCTCGACGCGGCAAAGGAGAGGAAAGACCTTTCTGAGTCTTAAAGTGGCTTTTATGACCTAGTCTTCCAACGTGATGTTTTTAGAGGCTGTTTGATCCATTTCTCAGAATGCTGTCACTATTGCTTGCAACTTCTATGCAAGTGTAGGTCTTATAGCTGGTAGTTGCTGCTTTCTTGTACAATAAAACTCTTAAACAT
>TU116970
TAAAACTCGGGTTCGCACGCTCTTTCTTCCCAGTTCCGTCTTCTTTGTGAGAGGTAGGCAATGTTCTTTAATTTTAACAcgttacttaaatttttttaaaaatagaagtttatctaaatgaaatgcttttagaAGCACGTCGCCTACGTTCAAAAGTAatgctaaaaactaaaactaaggATTTTGGTGTCGTTCCGCGCTGACCACGTGGCTCGTTTTCGGTGCACGTGGGGAAGTTATAGACCGTGAAAACTTGGCTGGTTTATAGTCTTATACGGATTAGTACGTATGCTAGTTAGTAAGAAGGATAAACAAGTTGCTTGATATTAAATTGCCAACGTTTCATATTGGCAGTTTTTTAAGCGATTTTGCAGTACGTTGTTTTCAGTCGCCAAAATATGATCAACAATATTCTCAATTTCTTTTTTGTCGTGCAGTATGGGGGCTGTTGGACCATGGCTCTTTCCTATAGCGCTTACTCCGATTTTGATCATACTGGAGCCTAATGGATGACCTGTGGAGTCTCCAAGACTCTTGAGTCTCTTGGAACTCCAAACCCGGAACAATTCTGTAATTCAAGAGGAACTTGCACCTTTTTGAATGGCCACACAAGTAAAACTGAGGTGTTTGAGCACTCTGTGCCGATGAAGACCCCCCTCAGAGCCAAGTGGCTGAAGTACACAGGCTTTCTCGACGCGGCAAAGGAGAGGAAAGACCTTTCTGAGTCTTAAAGTGGCTTTTATGACCTAGTCTTCCAACGTGATGTTTTTAGAGGCTGTTTGATCCATTTCTCAGAATGCTGTCACTATTGCTTGCAACTTCTATGCAAGTGTAGGTCTTATAGCTGGTAGTTGCTGCTTTCTTGTACAATAAAACTCTTAAACAT
>XR_006252031.1
TCACTGCGCTTGCGCGCGGACTATAAAACTCGGGTTCGCACGCTCTTTCTTCCCAGTTCCGTCTTCTTTGTGAGAGTATGGGGGCTGTTGGACCATGGCTCTTTCCTATAGCGCTTACTCCGATTTTGATCATACTGGAGCCTAATGGATGACCTGTGGAGTCTCCAAGACTCTTGAGTCTCTTGGAACTCCAAACCCGGAACAATTCTGTAATTCAAGAGGAACTTGCACCTTTTTGAATGGCCACACAAGTAAAACTGAGGTGTTTGAGCACTCTGTGCCGATGAAGACCCCCCTCAGAGCCAAGTGGCTGAAGTACACAGGCTTTCTCGACGCGGCAAAGGAGAGGAAAGACCTTTCTGAGTCTTAAAGTGGCTTTTATGACCTAGTCTTCCAACGTGATGTTTTTAGAGGCTGTTTGATCCATTTCTCAGAATGCTGTCACTATTGCTTGCAACTTCTATGCAAGTGTAGGTCTTATAGCTGGTAGTTGCTGCTTTCTTGTACAATAAAACTCTTAAACATCA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0009987 cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:1990904 ribonucleoprotein complex cellular_component
GO:0005840 ribosome cellular_component
GO:0019843 rRNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03010 Ribosome
ko03008 Ribosome biogenesis in eukaryotes

RNA

RNA id representative length rna type GC content exon number start site end site
TU116969 False 502 lncRNA 0.45 5 3746116 3747489
TU116970 True 886 lncRNA 0.41 4 3746116 3747489
XR_006252031.1 False 527 lncRNA 0.46 5 3746093 3747491

Neighbor

gene id symbol gene type direction distance location
LOC122353704 LOC107568056,LOC107730479,LOC107657995 coding upstream 15318 3725260 ~ 3730775 (+)
cpne5b cpne5b,LOC107680428,LOC107555996,LOC107751002,LOC107699334,LOC107101079,LOC105027122,LOC107385564 coding upstream 88804 3543698 ~ 3657289 (+)
kif21b kif21b,LOC107592560,LOC107680414 coding upstream 213920 3467547 ~ 3532173 (+)
srpk1b srpk1b,LOC107699336,LOC107714507,LOC107680449,LOC107592563,LOC107751004 coding upstream 293952 3415053 ~ 3452141 (+)
mapk14b mapk14b,LOC107680431,LOC107714506,LOC107699338,LOC103028137,LOC104939458,LOC108436315 coding upstream 331174 3392783 ~ 3414919 (+)
tmem38a tmem38a,LOC107702305,LOC107730482,LOC107658508,LOC107751025 coding downstream 5465 3752956 ~ 3759693 (+)
thop1 thop1,LOC107568058,LOC107658499,LOC107592556,LOC107730481 coding downstream 14055 3761546 ~ 3769572 (+)
reep6 reep6,LOC107698004,LOC107745351,LOC107556177,LOC107658751,LOC107710439 coding downstream 44414 3791905 ~ 3795946 (+)
LOC122354262 si:ch73-238c9.1,LOC107710444,LOC107658759,LOC107592584,LOC107745343 coding downstream 105121 3852612 ~ 3854297 (+)
trnaq-cug_18 NA coding downstream 160025 3907516 ~ 3907588 (+)
G79022 NA non-coding upstream 20002 3704241 ~ 3726091 (+)
G79021 NA non-coding upstream 44060 3701745 ~ 3702033 (+)
G79002 NA non-coding upstream 205024 3539988 ~ 3541069 (+)
G78898 NA non-coding upstream 354303 3391564 ~ 3391790 (+)
G78886 NA non-coding upstream 454693 3288201 ~ 3291400 (+)
G79039 NA non-coding downstream 1096 3748587 ~ 3749486 (+)
G79037 LOC107745340,LOC107698002,LOC107556194,LOC107710448,LOC107592552,LOC107658524 non-coding downstream 52982 3800473 ~ 3858370 (+)
G79051 NA non-coding downstream 135315 3882806 ~ 3886949 (+)
G79053 NA non-coding downstream 171346 3918837 ~ 3919429 (+)
G79144 NA non-coding downstream 432051 4179542 ~ 4294755 (+)
tmem167b tmem167b,LOC107592590,LOC107555997,LOC107699326 other upstream 354864 3386258 ~ 3391229 (+)
LOC122353713 LOC107714487,LOC107555999 other upstream 384435 3358210 ~ 3361658 (+)
camk2n1 si:dkey-33m11.6,LOC107572850,LOC107680422,LOC107555994,LOC107751034,LOC107714486,LOC107699327 other upstream 473474 3270199 ~ 3272619 (+)
G78790 NA other upstream 919299 2825539 ~ 2826794 (+)
G78763 NA other upstream 1065951 2678135 ~ 2680142 (+)
nwd1 nwd1,LOC107730478,LOC107710443,LOC107658741,LOC107592553,LOC107655543 other downstream 24064 3771555 ~ 3785342 (+)
trnaq-cug_17 NA other downstream 36473 3783964 ~ 3784035 (+)
LOC122354455 LOC107710444,LOC107658759,LOC107592584,LOC107745340,LOC107556194,LOC107698002,LOC107592552,LOC107710448,LOC107658524 other downstream 48915 3796406 ~ 3929528 (+)
adgrl2a adgrl2a,adgrl2 other downstream 313438 4060929 ~ 4152591 (+)
prkacba prkacb,prkacba,LOC107745335,LOC107669012,LOC107592581 other downstream 620934 4368425 ~ 4375388 (+)

Expression


Co-expression Network