G79075 (tmem38a,LOC107730482,LOC107702305,LOC107658508,LOC107751025)


Basic Information

Item Value
gene id G79075
gene name tmem38a,LOC107730482,LOC107702305,LOC107658508,LOC107751025
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 3752930 ~ 3759723 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU117023
GACACAAAATTGTGAAGAATTTGAAacaactgattttaaaataatttattttaatttattgtttgaaaatatattgtgttttttcccAATTCAACTggattttaaaaagcagcagTATTCTGTGGAAGTCGGGTCAACCAGCGGTGGACGACGAGTCTCATCAGGTTATTCAGATTGACCCTTCAGTGAAGTATGAACTCAAACGTCAAACTCAAACTGCCTTTCGTTCATTCACCTGTTCATGACACACTGCACATCATCAGATGCAAGGGGAGGAGGGGCTTGAATGATGGAAAACATTACGTATAATAAAGACATGGATGTCGGTAAAGAGGGGGGTAAGCTATTTACAGAGTCCCTATATGGCATGTCTGTCATTAAAAGCACCACTGAAAGAGAAACTTGCATTGGTTTAATCAATCAAATTCCCTCCTTTCTCAAGTAGAGCCAGGCCGCTCTGTCATATCACAGGTTGGGTTGAtgattttttgtattgttattcTACTCTGCTTTCTTGGGCTTCCTCTTGCGGGTTCCTTCACTCAGTTCCTCTTTGGTTTTAGCGGGCGAGAGCGGCGCAGAGGCAGCGGCTGGAGCGGAGTGGTGATGATCATGGGCATCTTCGGTGCCGAGGGGTGAACGGAAGAGCAGGTGGCACAGCCAGGACTCGATGAGGGCGAATGGAGATCCGTGAGAGTGACGGGCCGTCATAAACACTTGGTTGTGGCCATAAAGAGTGTGAAGAGGCAGATGAGTGTGCTTTTAGACACAGGGAGCAAGTGAGCCTCCTGAAGGGTGAACAAAATGGCTCCATACAGACTGGCCTTGGTAGGGCTGAAAAATACAAGAATCACATTCTAAACATGACGTTGAAGACGTTGAATGAAACACATCATTTATATGGACTATAGTGCTATTCAGTGGTGgtttttgtcaattttaaacacaatttttcaaactttattgtgattatttggtaaagctttattttaaggtgtcaaaATGCCTAATTACCTAGTTTGGTACTTTGtggtagccattgtacttacacGAAACAAAATGTTCTTATCATGTAACTAACACGAAGAGGCCGGATCAGGCTGTAATTGCAGTTTGACTGATTATCTGCTAGTTGGTCAATCTTAGCAGCCTTGTCTATGCAGCTGTCCCATAGTCTCTACAAAATTGGCTTCATAAAATTCTCCCTCTGTGTAAGGTTTTCCACTCACAATGACATGTTGAGAACTTCGTTGGTCTCTGGCTTCCAGACTCCTCGCAACAGCTGCTCAAAATTGGACATGAGAGCGACCCCTGACCCTGCGAGTTTTAACAGAGACAATCAGCAGAGCCTCCCAAGCAAGAGTTTTTAAAGGGTCTTATGAAAGCGTTACGTGACCCCTAAAAATAAATCCCTCTGGAGATACAAGATACTTACCCTTAACATAACCAGTAATGACCATGATCAGCCAGCCGTGGTGATACGCATGGTGCGCATGATGAACTCCAGCAGCGATTTTACGTGTGCGGACCACTTCTTTCATTGCAACTAGCACAAGCTTCACAGGCATGAAGGCCACGCATTTGTAAAACAGGTTAAGAGGGCAGAAGAAAATCAGGTACCACAGCTGAGGCCAGGAGGATGTGACTGTTGTTATGGAAATAGTCAATGGGAGACACACCAAGCATGACGTCTGCTAGTATGTAGCTTCCAAAGCAGTAGAGCATTGCACAAAGCCATGAGGCCACTGGGCTTCTACGGGACACTTCCACAACCTGGTTCATATTTGAGGTAGAGTATTGACACGATATAATAAGCGACATCAAAAACTGGAAACATCGCCATTTTCGAGAAATACTGGGCAATTTCGCCCAGATTTAGGACATCCAGCACCTCCATGATGTTATGCCCCTACCGCATGAACAGATCTTCTAGAGACTCGCCGCGCGTACGAGTAAAAGGCTCCGTTCACATGCAGATGCCTATTAATACACAGCACAAGAAGCTCAG
>TU117025
tatatcCAGATTTACCTTAAAGATCAATCTTAAAGAGTTTTTTGAAGTGGCTTTGTGAGCGTGCAAGCACTGAACCATTTAAAGATCCTCACCACACAGCTGAGGCCAGGAGGATGTGACTGTTGTTATGGAAATAGTCAATGGGAGACACACCAAGCATGACGTCTGCTAGTATGTAGCTTCCAAAGCAGTAGAGCATTGCACAAAGCCATGAGGCCACTGGGCTTCTACGGGACACTTCCACAGCTGGTTCATATTTGAGGTAGAGTATTGACACGATATAATAAGCGACATCAAAAACTGGAAACATCGCCATTTTCGAGAAATACTGGGCAATTTCGCCCAGATTTAGGACATCCAGCACCTCCATGATGTTATGCCCCTACCGCATGAACAGATCTTCTAGAGACTCGCCGCGCGTACGAGTAAAAGGCTCCGTTCACATGCAGATGCCTATTAATACACAGCACAAGAAGCTCAG

Function

symbol description
tmem38a Predicted to enable potassium channel activity. Predicted to act upstream of or within potassium ion transmembrane transport. Predicted to be located in nuclear membrane and sarcoplasmic reticulum membrane. Predicted to be integral component of membrane. Is expressed in adaxial cell; musculature system; myotome; and somite. Orthologous to human TMEM38A (transmembrane protein 38A).

NR:

description
PREDICTED: trimeric intracellular cation channel type A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU117023 True 2008 lncRNA 0.44 4 3752930 3759723
TU117025 False 481 lncRNA 0.45 2 3752930 3756266

Neighbor

gene id symbol gene type direction distance location
smim7 smim7,LOC107568062,LOC107703137,LOC107658516,LOC107592586 coding downstream 3219 3747493 ~ 3749711 (-)
bmp7a bmp7a,LOC107730480,LOC107657209,LOC107568055,LOC107751030,LOC107658719 coding downstream 10568 3732982 ~ 3742362 (-)
si:ch211-253b8.5 si:ch211-253b8.5,LOC107653378,LOC107568061,LOC107592587,LOC107680420,LOC107730476 coding downstream 37352 3704572 ~ 3715578 (-)
cdh27 LOC107654208,LOC107730486,LOC107568064 coding downstream 50724 3691160 ~ 3702206 (-)
LOC122353608 LOC107658808,LOC107568054,LOC107750169 coding downstream 64650 3683809 ~ 3688280 (-)
zgc:113223 zgc:113223,LOC107698001,LOC107556176,LOC107745344 coding upstream 25808 3785531 ~ 3791150 (-)
apc2 apc2,LOC107745340,LOC107592552,LOC107556194,LOC107710448,LOC107658524,LOC107698002 coding upstream 162577 3922300 ~ 3950755 (-)
vtg3 vtg3,LOC107745337,LOC107556190,LOC107669019,LOC107710446 coding upstream 213033 3972756 ~ 3983180 (-)
adgrl4 adgrl4,LOC107556188,LOC107745336,LOC107710447,LOC107592582 coding upstream 225767 3985490 ~ 4002645 (-)
ttll7 ttll7,LOC107745334,LOC107669020 coding upstream 532625 4292348 ~ 4367165 (-)
G79069 NA non-coding downstream 33516 3716689 ~ 3719414 (-)
G79010 NA non-coding downstream 95641 3654282 ~ 3657289 (-)
G78969 NA non-coding downstream 338006 3412874 ~ 3414924 (-)
G78919 NA non-coding downstream 485255 3266756 ~ 3267675 (-)
G78918 LOC107751023,LOC107680412,LOC107555990,LOC107699319,LOC107714481 non-coding downstream 486258 3266184 ~ 3266672 (-)
G79083 nwd1,LOC107710443,LOC107658741,LOC107592553,LOC107655543,LOC107730478 non-coding upstream 20276 3779999 ~ 3780317 (-)
G79126 NA non-coding upstream 349381 4109104 ~ 4112070 (-)
G79172 NA non-coding upstream 614925 4374648 ~ 4375393 (-)
G79227 NA non-coding upstream 628378 4388101 ~ 4388739 (-)
G79236 NA non-coding upstream 639783 4399506 ~ 4400590 (-)
G79003 NA other downstream 211875 3540001 ~ 3541055 (-)
cdab cda,LOC107714500,LOC107751011,LOC107572847,LOC107680435,LOC108436250,LOC105898129 other downstream 496718 3253863 ~ 3256212 (-)
G78853 gata2a,gata2,LOC107714496 other downstream 639238 3112933 ~ 3113692 (-)
spcs1 spcs1,LOC107566449,LOC107714491,LOC107680421,LOC107699355,LOC107744856,LOC107572401 other downstream 704706 3046738 ~ 3048224 (-)
trnai-aau_68 NA other downstream 766399 2986458 ~ 2986531 (-)
LOC122354343 cpne5b,LOC107680428,LOC107714485,LOC107555996,LOC107699334,LOC107751002,LOC108436414 other upstream 53782 3813505 ~ 3834923 (-)
G79085 zgc:113223,LOC107745344,LOC107698001,LOC107556176 other upstream 153525 3913248 ~ 3914635 (-)
si:dkey-197i20.6 si:dkey-197i20.6,LOC107745350,LOC107710445,LOC107658773,LOC107669007,LOC107592569 other upstream 202258 3961981 ~ 3965791 (-)
mmel1 mmel1,LOC107712974,LOC107756657,LOC107654428,LOC107702001,LOC107592889 other upstream 1979293 5739016 ~ 5765140 (-)
G79565 NA other upstream 2336410 6096133 ~ 6096480 (-)

Expression


Co-expression Network