si:dkey-197i20.6 (si:dkey-197i20.6,LOC107745350,LOC107710445,LOC107658773,LOC107669007,LOC107592569)


Basic Information

Item Value
gene id si:dkey-197i20.6
gene name si:dkey-197i20.6,LOC107745350,LOC107710445,LOC107658773,LOC107669007,LOC107592569
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 3961981 ~ 3965791 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU117068
GCTCAGAGACTGAATACCAACAGCATGAAAACTCTATTGCTCTGTGTGTTTCATGTCATATTCCTCAGAGTTTATGAAATCCAGTGTAAATCTCACCCAAAGCCTTCGTGTGGATACCCTCCTTCTCAATGGTGCAGGTCTCTGGAGATCGCCATAGAATGTGGGGTTCGGAAACAATGTATGGAGCTGAACGCTACCCGGCCTGACCCAGTGGTTCCTCCTGTAGAGATCACCGTCTATTACGAGAGCCTGTGTCCAGGCTGCAGAGCGTTCCTTACAGAACAACTCTTCCCAACATGGACTTTACTAAAAGATATATTGAAAGTCCACCTGGTGCCCTTCGGCAATGCTAAGCCAGTCATGCAGCATTTCCTATCATTCACTGCATGGAGTCATCTGCAGATGTACTAAAATCTGCTAAGCCTTGTTTGCAGCTCTATGCGCCATTTGTTAAATGGCAGACTATAGAGTCTTGTACCAGAGGAGAGCTTGGCCACAGGTTGATGCATCAAAATGCAGCGAAGACACAAGCACTCAAACCAGCACACACTCATGTTCCCTGGATCACATTCAATGGGGAATACACTAGTGAATGGGAAGATAAGGCTATGTCCACTCTCTTCAACCTTGTATGCAGTTTGTACAAAGGAATCAAGCCACCAGTCTGCACTGGAGCTCTGAAAAAACTGGACCGAAGCTTTTGCTAGTGGAAGAGAGGATTGTTCCACAATACATTTGTGATATATCATGTTCTTTAAActttaatctgtttttgtgtgtttgaggtaaaataaaaagaataacatttttaggtTTAACACCTTTATTTCAGTAGTTccacatgtcaactagcagtcattagagtattggTAGACTGtttgcttaatatcttctaacgctttattttgatggctcCTCAGCATGCAACATGCTGACTATAAAAATCTTTGTAAGTACATGTCAAATGATTCTATTAAACCTTGCTCTGT
>XM_043251577.1
TCTGCTCTCAGAAAGCTCAGAGACTGAATACCAACAGCATGAAAACTCTATTGCTCTGTGTGTTTCATGTCATATTCCTCAGAGTTTATGAAATCCAGTGTAAATCTCACCCAAAGCCTTCGTGTGGATACCCTCCTTCTCAATGGTGCAGGTCTCTGGAGATCGCCATAGAATGTGGGGTTCGGAAACAATGTATGGAGCTGAACGCTACCCGGCCTGACCCAGTGGTTCCTCCTGTAGAGATCACCGTCTATTACGAGAGCCTGTGTCCAGGCTGCAGAGCGTTCCTTACAGAACAACTCTTCCCAACATGGACTTTACTAAAAGATATATTGAAAGTCCACCTGGTGCCCTTCGGCAATGCTAAGGAGCTTCCCGAAGAGAATTCATTCTCATGTCAACATGGAGAACCAGAGTGCCACTCTAACATGGTTGAGgcATGTGTTTTATATGCAGCCAGTCATGCAGCATTTCCTATCATTCACTGCATGGAGTCATCTGCAGATGTACTAAAATCTGCTAAGCCTTGTTTGCAGCTCTATGCGCCATTTGTTAAATGGCAGACTATAGAGTCTTGTACCAGAGGAGAGCTTGGCCACAGGTTGATGCATCAAAATGCAGCGAAGACACAAGCACTCAAACCAGCACACACTCATGTTCCCTGGATCACATTCAATGGGGAATACACTAGTGAATGGGAAGATAAGGCTATGTCCACTCTCTTCAACCTTGTATGCAGTTTGTACAAAGGAATCAAGCCACCAGTCTGCACTGGAGCTCTGAAAAAACTGGACCGAAGCTTTTGCTAGTGGAAGAGAGGATTGTTCCACAATACATTTGTGATATATCATGTTCTTTAAActttaatctgtttttgtgtgtttgaggtaaaataaaaagaataacatttttaggtTTAACACCTTTATTTCAGTAGTTccacatgtcaactagcagtcattagagtattggTAGACTGtttgcttaatatcttctaacgctttattttgatggctcCTCAGCATGCAACATGCTGACTATAAAAATCTTTGTAAGTACATGTCAAATGATTCTATTAAACCTTGCTCTGTCaaagacatgtagttgcaaatgaatgagaataaGGTTGACATAGTTAGAGTTACTCATAAATAGTacaatgtctaaagtggactatcaaaatcaaatgtaaccacattataaaatattgacGCAGTTTTAACCATATGTACAGTGGAGATTGGAGCATAATTTATGAAAACGTGATTAGTGAAATCCTGTTCCAGTCTTTTACACAGACCAGATAGCGGGTTCTTAATCATAACTTTGTCAATGGGGATTTTCCAGAGATTTTAAAATAGGTTTATGTCAGAAATTTGGGCTGACCATTTCATGGTTCATGTCAATCTTCTAAGGATTTCAGGCACTTTAGAATGGCTTACCACCTTGCAAAGTCAGTAAAAACTGGAAAGTCAGAATGCCAGTTAAATAGggtttctaaaatgtaattaaggAGGGGGGCAGATTAATAGCAACTAGAAGGCATCTGAAAGTGTTGTCTAATTTTAAACGGCActctttttcaaatattttttttaatattgagaatATATTGAACTCATGTTTTGCAATGTTTGGTTGTTCGTTTTTTAGAACTACGCAGTGGTTTCAATTTTAGGAAAATTGAGGAAACTGTAGGTTGTTGTCTAATTTTGATCTCCACTATGTAGGCACCTGGCTAAACTTCTGAGACAAAAGGATGCTTAAAGCTGCAGTacgcaatttttatttttttaattttttttatttttcagtatttgaaCAAGTACTTAACCACTCGGTGTTTAAAACTATTGCGTTTCCTAAGCCCGATTCACAATGGTTCGTTTATAATGATGTTTTGTACTTCTCTGCGCTCTGTGCGTCTTTACCTCAGTTTTGTAACCAGTGAAATTCAAATGATGTGACAtcaataaaacagattttagactgtacatacatttaaatctgCACGCTAATACACA

Function

symbol description
si:dkey-197i20.6 Predicted to enable oxidoreductase activity, acting on a sulfur group of donors. Predicted to be located in extracellular region. Predicted to be active in lysosome. Orthologous to human IFI30 (IFI30 lysosomal thiol reductase).

NR:

description
PREDICTED: gamma-interferon-inducible lysosomal thiol reductase-like

GO: NA

KEGG:

id description
K08059 IFI30, GILT; interferon, gamma-inducible protein 30

RNA

RNA id representative length rna type GC content exon number start site end site
TU117068 False 989 TUCP 0.42 6 3962914 3965777
XM_043251577.1 True 2024 mRNA 0.38 7 3961981 3965791

Neighbor

gene id symbol gene type direction distance location
apc2 apc2,LOC107745340,LOC107592552,LOC107556194,LOC107710448,LOC107658524,LOC107698002 coding downstream 11226 3922300 ~ 3950755 (-)
zgc:113223 zgc:113223,LOC107698001,LOC107556176,LOC107745344 coding downstream 170831 3785531 ~ 3791150 (-)
smim7 smim7,LOC107568062,LOC107703137,LOC107658516,LOC107592586 coding downstream 212270 3747493 ~ 3749711 (-)
bmp7a bmp7a,LOC107730480,LOC107657209,LOC107568055,LOC107751030,LOC107658719 coding downstream 219619 3732982 ~ 3742362 (-)
si:ch211-253b8.5 si:ch211-253b8.5,LOC107653378,LOC107568061,LOC107592587,LOC107680420,LOC107730476 coding downstream 246403 3704572 ~ 3715578 (-)
vtg3 vtg3,LOC107745337,LOC107556190,LOC107669019,LOC107710446 coding upstream 6965 3972756 ~ 3983180 (-)
adgrl4 adgrl4,LOC107556188,LOC107745336,LOC107710447,LOC107592582 coding upstream 19699 3985490 ~ 4002645 (-)
ttll7 ttll7,LOC107745334,LOC107669020 coding upstream 326557 4292348 ~ 4367165 (-)
uox uox,uric,LOC107669002,LOC107560424,LOC107658581,LOC107742901,LOC108430123,LOC103030682 coding upstream 415376 4381167 ~ 4383953 (-)
ctbs ctbs,LOC107742908 coding upstream 435037 4400828 ~ 4404173 (-)
G79083 nwd1,LOC107710443,LOC107658741,LOC107592553,LOC107655543,LOC107730478 non-coding downstream 181664 3779999 ~ 3780317 (-)
G79075 tmem38a,LOC107730482,LOC107702305,LOC107658508,LOC107751025 non-coding downstream 202258 3752930 ~ 3759723 (-)
G79069 NA non-coding downstream 242567 3716689 ~ 3719414 (-)
G79010 NA non-coding downstream 304692 3654282 ~ 3657289 (-)
G78969 NA non-coding downstream 547057 3412874 ~ 3414924 (-)
G79126 NA non-coding upstream 143313 4109104 ~ 4112070 (-)
G79172 NA non-coding upstream 408857 4374648 ~ 4375393 (-)
G79227 NA non-coding upstream 422310 4388101 ~ 4388739 (-)
G79236 NA non-coding upstream 433715 4399506 ~ 4400590 (-)
G79256 NA non-coding upstream 498996 4464787 ~ 4469281 (-)
G79085 zgc:113223,LOC107745344,LOC107698001,LOC107556176 other downstream 47346 3913248 ~ 3914635 (-)
LOC122354343 cpne5b,LOC107680428,LOC107714485,LOC107555996,LOC107699334,LOC107751002,LOC108436414 other downstream 127058 3813505 ~ 3834923 (-)
G79003 NA other downstream 420926 3540001 ~ 3541055 (-)
cdab cda,LOC107714500,LOC107751011,LOC107572847,LOC107680435,LOC108436250,LOC105898129 other downstream 705769 3253863 ~ 3256212 (-)
G78853 gata2a,gata2,LOC107714496 other downstream 848289 3112933 ~ 3113692 (-)
mmel1 mmel1,LOC107712974,LOC107756657,LOC107654428,LOC107702001,LOC107592889 other upstream 1773225 5739016 ~ 5765140 (-)
G79565 NA other upstream 2130342 6096133 ~ 6096480 (-)
vamp3 vamp3 other upstream 2847834 6813625 ~ 6847790 (-)
phf13 LOC107756642,LOC107751178,LOC107582403 other upstream 3165787 7131578 ~ 7141236 (-)
LOC122354641 svbp other upstream 3187674 7153465 ~ 7155275 (-)

Expression


Co-expression Network