LOC122353716


Basic Information

Item Value
gene id LOC122353716
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 5162029 ~ 5164464 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU117385
AGAAAATCCAACAAGCTCAGGCCTCACACATTCATATGGAGATTTGGGAGTATAAATAGAGGAGCTGCAGCCAATGCAAATCAGACTCACTCTGAACAGAGAAATCTACAGCACAGAGATCCAGACATGACACTTACAATCATCTCAAAGGAGCAGCTCCCTCTTAACAACAAGCTAAAAAGCTAAGGATGGAGAAAATGCATAGCAACGCGTCTTCTGGCTCCAGAGTTTCTCTGGCATCAGTCTGATTTCATGCCGAAAAAGCAGATATCCTGTAGATGATGATCAACGTCCTGCAACAGCACAGTCCAAAATTGAGACGTAGACAGAGAGCTCAAGAAGACTACTGAAGCAGTTTCAGAAGCTGCAGACTTCATGTGAGCGAAACTGGAGGGAAAGTGTCTTGCAAACACCTTTAGCAAAGAGTTGAATGTCAATAAGAGCGCCATCTAAAGGCCTTGTTAAAAATTCAGACTGAATGCCTGTACCTGGACTTCAGTGctaatttctctttttaagtaaaaaaagtgttttaaagagTTTGAAAGAGATATTTTTACTGCAAAGTGCTTCAATGATTCAATCTTCTATGAAGTCTTCACAACAAGAGTTCCAGATGGCGACATTTACTGATGTCTATATTAGACACTGACTTTAAGATACATCTGCATGTGATGTGTAAGGTTCaaccttttcctgcagaacggaatccagaggccctggtcgaaggtcaatgtgTGTTCGTGTCTTTCTTTTGCGTCttgttaaaatcactaatatttatgaatcttttttgtgtttccaattatagtaccgaccttatacataattttatctgactccaatctttcgtgattttatttatatttaataattaactataatatttcctagtttcgacttaccattcgttaggagtctgggtcgcttagagaccttgtttggccaggacagactcacgacacatctgggctagtccaggtcttagtcagaggctaccccgtagatcgcttcccttaatgcagccatttcctcaatagactcaaaaagagtaattttttatgcattccctaatagcatgctaagccagtttggtggccagaagtcaagatctcaaaaacgtgcccccggctccatccattgatcgttgatctgactcaccaacaatgcggaaaacctcagaagtcactaacctactagaaaagttatttcagacaatattataagttaaccaagattgatgtttattttgtcaggcaagaatagtttccaaattggtataattcatagacatttgcacaactgatcagcagtacaaaaataacacaaaacaaaataaaacttaaaaagtacatagtatggtgtatgCGGACACATGCCACACTGCGGGCCGATCTGGCTCTGGTTTTGTCAcattccttatatactcagactggacaaagagatcccaaatgtagttgtataaaccttttggtgtttaggttcccgtgctccaatgtcacacctggctggaacacgttcagagacccaaaaggaggacacacctccttctcaacagaacacagttcctccaagttcttaatcttctccataatataagggattactgtgaaattgagaccaatttatcaatcgcactgagacctttcaaatgagaccaaacaagagagtgaagaacaataagTTCACAAGGCACATGATATACCATGACTTAAGTTAAAACCAACTCTTTTTGGGCAGAAggggggaagcaggaagagcagaggtgatgaagagggtgtcataaacacaacaggtgggggggtgttgtttactctctttttgaagtccttttgttcctttggatatcccttctcagattagtcttattacatttacaggttttgattcacctccttacagaTGTGAAAGAAATGTTGTCTTTATTTCAAAGGCtatatattatttgataatTACTCAGACACTAAAACTTTGCTccaaagactgaaaaataagGATTTTTAACAATCACttgatttgattaatttgatGGCAAGAATTAAGCTTgtactgtttaaataaaatggcttAAAATGTGCTCAAATTTGATTTCATCCGGGATTATAATCATCCagcactttttaatgttttctccTTGGTCTATAATAGATCAGATTCAGATTTACCCTGTTTTAAGTGTTTGTAAACATTTGTTGTTTCACAATGTTCTCAAAATCTTTTCCTGTACTGTATACAGTTTTCCTTGTTTCTTCTGTGAAGATTCATATTATTATGACATCaactttctcattttctcatttatcttttaataGACCGGGTGAGT
>XR_006252054.1
AATAGAGGAGCTGCAGCCAATGCAAATCAGACTCACTCTGAACAGAGAAATCTACAGCACAGAGATCCAGACATGACACTTACAATCATCTCAAAGGAGCAGCTCCCTCTTAACAACAAGCTAAAAAGCTAAGGATGGAGAAAATGCATAGCAACGCGTCTTCTGGCTCCAGAGTTTCTCTGGCATCAGTCTGATTTCATGCCGAAAAAGCAGATATCCTGTAGATGATGATCAACGTCCTGCAACAGCACAGTCCAAAATTGAGACGTAGACAGAGAGCTCAAGAAGACTACTGAAGCAGTTTCAGAAGCTGCAGACTTCATGTGAGCGAAACTGGAGGGAAAGTGTCTTGCAAACACCTTTAGCAAAGAGTTGAATGTCAATAAGAGCGCCATCTAAAGGCCTTGTTAAAAATTCAGACTGAATGCCTGTACCTGGACTTCAGTGctaatttctctttttaagtaaaaaaagtgttttaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU117385 True 2323 lncRNA 0.38 2 5162029 5164464
XR_006252054.1 False 483 lncRNA 0.42 2 5163815 5164410

Neighbor

gene id symbol gene type direction distance location
LOC122354090 LOC107658671,LOC107718693,LOC107557899 coding downstream 652849 4497560 ~ 4509180 (-)
ghrh LOC107718698,LOC107557909,LOC107745328,LOC107658696,LOC107560430,LOC107669017 coding downstream 674832 4484135 ~ 4487197 (-)
pank4 pank4,LOC107742899,LOC107557906,LOC107745330 coding downstream 707593 4436874 ~ 4454436 (-)
draxina LOC107560421,LOC107745332,LOC107669000,LOC107557905 coding downstream 725993 4418920 ~ 4436036 (-)
LOC122354543 agtrap,LOC107745345,LOC107669010,LOC107742911,LOC107557898,LOC107658604,LOC107560425,LOC107560418 coding downstream 749939 4405965 ~ 4412090 (-)
LOC122353703 LOC107712987,LOC107746004,LOC107701987,LOC107592853,LOC107735212,LOC107706548,LOC107557400 coding upstream 46318 5210782 ~ 5212158 (-)
aldh4a1 aldh4a1,LOC106582961 coding upstream 53769 5218233 ~ 5229330 (-)
iffo2b iffo2,LOC107557407 coding upstream 79143 5243607 ~ 5273639 (-)
akr7a3 akr7a3,akr7a2,LOC107712983,LOC107657980,LOC107582419,LOC107557399 coding upstream 115003 5279467 ~ 5284046 (-)
kcnab2a kcnab2a,LOC107592856,LOC107712982,LOC107657983,LOC107582417,LOC108431628,LOC108255041 coding upstream 189195 5353659 ~ 5382528 (-)
G79256 NA non-coding downstream 692748 4464787 ~ 4469281 (-)
G79236 NA non-coding downstream 761439 4399506 ~ 4400590 (-)
G79227 NA non-coding downstream 773290 4388101 ~ 4388739 (-)
G79172 NA non-coding downstream 786636 4374648 ~ 4375393 (-)
G79126 NA non-coding downstream 1049959 4109104 ~ 4112070 (-)
G79327 LOC107393734 non-coding upstream 7311 5171775 ~ 5172519 (-)
G79329 LOC107660256,LOC107566921 non-coding upstream 16832 5181296 ~ 5181698 (-)
LOC122354468 NA non-coding upstream 29548 5194012 ~ 5195326 (-)
G79361 NA non-coding upstream 75050 5239514 ~ 5240712 (-)
G79454 NA non-coding upstream 544530 5708994 ~ 5710707 (-)
si:dkey-197i20.6 si:dkey-197i20.6,LOC107745350,LOC107710445,LOC107658773,LOC107669007,LOC107592569 other downstream 1196238 3961981 ~ 3965791 (-)
G79085 zgc:113223,LOC107745344,LOC107698001,LOC107556176 other downstream 1247394 3913248 ~ 3914635 (-)
LOC122354343 cpne5b,LOC107680428,LOC107714485,LOC107555996,LOC107699334,LOC107751002,LOC108436414 other downstream 1327106 3813505 ~ 3834923 (-)
G79003 NA other downstream 1620974 3540001 ~ 3541055 (-)
cdab cda,LOC107714500,LOC107751011,LOC107572847,LOC107680435,LOC108436250,LOC105898129 other downstream 1905817 3253863 ~ 3256212 (-)
mmel1 mmel1,LOC107712974,LOC107756657,LOC107654428,LOC107702001,LOC107592889 other upstream 574552 5739016 ~ 5765140 (-)
G79565 NA other upstream 931669 6096133 ~ 6096480 (-)
vamp3 vamp3 other upstream 1649161 6813625 ~ 6847790 (-)
phf13 LOC107756642,LOC107751178,LOC107582403 other upstream 1967114 7131578 ~ 7141236 (-)
LOC122354641 svbp other upstream 1989001 7153465 ~ 7155275 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G244287 NA non-coding CI01000057 null 413912 ~ 415609 (-)
tiger barb (Puntius tetrazona) G186842 NA non-coding NW_025048297.1 JAEQBD010000642.1 144287 ~ 144562 (-)