G79575


Basic Information

Item Value
gene id G79575
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 6203867 ~ 6205704 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU117721
CCCTGTTAACAGAAGATCGGACAGACATTAGTGCCAGTGGTAAAGCAGACAGCCAGTTAATCTTAAGTTGCGCACATATTTTAGCAAGCTTGTGTTTCAGGGTTAGATTCATACGTTCGACTTTTCCTTGTGATTGGGGATGGAACACAGCACCAAATGAATGTGTCAAGCCTAAGGCTGTTTCTACAGTTCTtaagtgcacatttttaaaatgacttccaTTGTCAGACCTAATCCGTCTCGGAAAACCATAATGGGGTATATAATgatttatcaaacattttattacagcgGTGCTGTCTTCCTTCCCCACAGGAAATGCTTCTGGCCATCCAGTGTAGGTGTCTACCATGACCAACAGGTACCTCTTACCATTTATTCTGTCTATCATATCAGTAAAATCAATGACTACCTCATCACCTGGTCCACTAGCCAGTGGAAAATGACCAGCTGATGGGCGCATTGAAGGCTTAATGTTGTGTTCTTGACAAACTTCACATGAAACAATATGATGTGAAATCAAATGTGGCATGAAAGGGTGCCACCATGACTGTAATGCACGAGACATTTGTTTGTCTCCACAGTGAGATGGACTATGAATTTGTgtcaaaacagaaacagctaATGATGAGGATAACACAGGACGACCATCTGGTGACGTCCACAAACCATCATGTGCCTTAATAGCTCCTTTGTGTAACCATTGAGTCTTTTCTGATGGGCTAGCTAGGTGTTGTTGTTCAATTATATAAGGTCTGGATAAATTAGGAAACAAATCAGACAGCTGACGCTGTGACATCATTAGGCATTGACTTGGTAGATATCCAGCTGCCTTTTTTGGCGCTTCATCAGCCGCTGCATTTcctaatgaaatgttttttccatTATCTTTCCCACACTATTCATTATATCTGTGTAACCATCCTTTGCTTCTATAAAATCTTTACTTACTTGTTCAGCTATCTCAGTAAATGGCATGTCCATGTCTAACTGCCCTCCCTTCACTTCCATCAAAGGCATCTGTCTCTCTACATAAGTGGGAGGTGCTGTTGGTAAGGGCGGATACAGTCGGGCGGAAGCTAGTGATGCACTAGGCTGTGGGCTTCCTActttcacttcctgtctctgttTAGCTGCTGCACTATCaacttcctttttcttctttggtaCGCCCAATGCTGTTACAGTCACTGCCGTGCTGGTCCACTTTCTCAATTCATCATCTAACTTCTCTCCCTCTGTTTTATATGAACCCTTTTTGTACCACTGAACATCCTTCTTCTTATCTCTATGCTGCATAACTTTTACACGTGCCCTTCTTTCTAATTCTCTTATTTTCGGTCCTAAAGCAACTGTTTTCTGTCCAATATCTGGTCCAAATGCTACTACCATAGTTTCCCACTGTTCACCTAATTCCTTCTCTCTACCCTTTTTATCTTTTGGTGGTGTCTGTGCTATTTCCATATCTACTACATTCAGCCATTGCGTCAATACAGGGGGATATCCATACTCATCACATTCTTTctcaaactctgccattttaCAATCTTCCTCTACATAATacttctttgtttatttaaatattctacaCAGTTCTACTATTTAGCAATTATCTCTTATACAATTTTAAGCACAATAATGCAACATAAACACttccacttatttttaataaaacaatgtatcaacaataatgcaataattacttaaaatatccACATTAACAACGGATTTAATGCACTGACATACACAAGCAAGGaattatactatatacatataattatatatatacaacgaTCGTATTATATTCGTTTCAATTGTTTAACCTTTCACTCGCACAA

Function

GO:

id name namespace
GO:0045087 innate immune response biological_process
GO:0045088 regulation of innate immune response biological_process
GO:0045089 positive regulation of innate immune response biological_process
GO:0002253 activation of immune response biological_process
GO:0006952 defense response biological_process
GO:0048518 positive regulation of biological process biological_process
GO:0006955 immune response biological_process
GO:0080134 regulation of response to stress biological_process
GO:0031347 regulation of defense response biological_process
GO:0031349 positive regulation of defense response biological_process
GO:0048583 regulation of response to stimulus biological_process
GO:0048584 positive regulation of response to stimulus biological_process
GO:0002376 immune system process biological_process
GO:0002682 regulation of immune system process biological_process
GO:0002684 positive regulation of immune system process biological_process
GO:0050776 regulation of immune response biological_process
GO:0050778 positive regulation of immune response biological_process
GO:0002218 activation of innate immune response biological_process
GO:0002221 pattern recognition receptor signaling pathway biological_process
GO:0002224 toll-like receptor signaling pathway biological_process
GO:0002757 immune response-activating signal transduction biological_process
GO:0002758 innate immune response-activating signal transduction biological_process
GO:0002764 immune response-regulating signaling pathway biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU117721 True 1838 lncRNA 0.39 1 6203867 6205704

Neighbor

gene id symbol gene type direction distance location
ccdc50b LOC107592910,LOC107756624,LOC107751234,LOC107654367,LOC107654434 coding downstream 272383 5916996 ~ 5931484 (-)
si:dkey-264d12.5 LOC107592908,LOC107756646,LOC107654411,LOC107654359 coding downstream 307652 5887765 ~ 5896215 (-)
LOC122353621 LOC107756649,LOC107592864,LOC107654397 coding downstream 335792 5861347 ~ 5868075 (-)
slc45a1 slc45a1,LOC107702000,LOC107654425 coding downstream 478493 5711807 ~ 5725374 (-)
errfi1a errfi1,LOC107701998,LOC107756659,LOC107592857,LOC107736087,LOC107654423,LOC107579142 coding downstream 559846 5636129 ~ 5644021 (-)
per3 per3,LOC107751173,LOC107756610,LOC107582444 coding upstream 612828 6818532 ~ 6838832 (-)
camta1b LOC107751174,LOC107654393,LOC107756644,LOC107654440,LOC107582404 coding upstream 643285 6848989 ~ 7121128 (-)
cdc42 cdc42,LOC107083933,LOC103386293,LOC100697482,LOC108435227,LOC103465423,LOC100691174,LOC101164400,LOC108248645 coding upstream 1067138 7272842 ~ 7286099 (-)
c11h1orf50 zgc:112255,cunh1orf50,LOC107756638,LOC107654365,LOC107654415,LOC107565729,LOC107582467,LOC107751182 coding upstream 1084906 7290610 ~ 7294450 (-)
nucks1a nucks1,nucks1a,LOC107654381,LOC107756632,LOC107654449,LOC107751185,LOC107577000 coding upstream 1283579 7489283 ~ 7495714 (-)
G79570 NA non-coding downstream 8944 6193831 ~ 6194923 (-)
G79562 NA non-coding downstream 127476 6075763 ~ 6076391 (-)
LOC122353632 NA non-coding downstream 128907 6074276 ~ 6074960 (-)
LOC122353631 NA non-coding downstream 261917 5937271 ~ 5941950 (-)
LOC122353630 NA non-coding downstream 267335 5934904 ~ 5936532 (-)
G79577 NA non-coding upstream 61522 6267226 ~ 6267585 (-)
G79608 NA non-coding upstream 126250 6331954 ~ 6733860 (-)
G79617 NA non-coding upstream 287837 6493541 ~ 6524307 (-)
G79621 NA non-coding upstream 359541 6565245 ~ 6567418 (-)
G79622 NA non-coding upstream 393642 6599346 ~ 6606074 (-)
G79565 NA other downstream 107387 6096133 ~ 6096480 (-)
mmel1 mmel1,LOC107712974,LOC107756657,LOC107654428,LOC107702001,LOC107592889 other downstream 438727 5739016 ~ 5765140 (-)
si:dkey-197i20.6 si:dkey-197i20.6,LOC107745350,LOC107710445,LOC107658773,LOC107669007,LOC107592569 other downstream 2238076 3961981 ~ 3965791 (-)
G79085 zgc:113223,LOC107745344,LOC107698001,LOC107556176 other downstream 2289232 3913248 ~ 3914635 (-)
LOC122354343 cpne5b,LOC107680428,LOC107714485,LOC107555996,LOC107699334,LOC107751002,LOC108436414 other downstream 2368944 3813505 ~ 3834923 (-)
vamp3 vamp3 other upstream 607921 6813625 ~ 6847790 (-)
phf13 LOC107756642,LOC107751178,LOC107582403 other upstream 925874 7131578 ~ 7141236 (-)
LOC122354641 svbp other upstream 947761 7153465 ~ 7155275 (-)
LOC122354401 epha8,LOC107756634,LOC107565732,LOC107654383,LOC107582396,LOC107654448 other upstream 1162668 7368372 ~ 7436471 (-)
snrpe snrpe other upstream 1822902 8028606 ~ 8035551 (-)

Expression


Co-expression Network