G79608


Basic Information

Item Value
gene id G79608
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 6331954 ~ 6733860 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU117766
TATGTAGCGCCCCCTACCTCCTTTTATAATGGCTTAGTAAGGAGCAGCACCAGGTTCAATAAACTAATGCCTAAGAGATGGTGTATTAAAAAGGCCCCTCTGACGTCACTGAACTATATACTTTTCTTTTAGACAGTTAATCAGAATAAGATATATACTCACAGTTTGACTGATCAAGAATAAActctttagaataaataaaacacttgaagtagaagaaaataaacagaatttaattcCAGTAAATTGAAAGAGTTAGAAATAGATTAACTTTCAAGTAGAATTAAAcagtaatactataatactatcaAGTAGTATTCACACCACCAAGATGATCTCAAATTGGATACCAAGTTACCCCCAGAAAGGGAAATGTCACAAATGACTGGATAAGGGAAGTGAGCTCCGTATCAAATACACTTTGAGTTAACTGAGATAATCAACACActggtaataaaatgtatactgtaatgtgatttttgtgtaaaaataacactatgAATACTCACAAACCTAAAGCGCGCTGAATAACTCTGTATGAATTGATAATAAACACCGtgggcccacacacacacacacacacacacacactcttataacCCACACCGAAGCAGGCCTGAATCGTCGCTTGGGTACGTAGTGGCCgtggaaacagaaaaaactggcctcttcactctcctgagcagcaaacaaatgaaaaccagTGTACCTGGATTCTTTTTTGAACTGTGATACGATCGCGAAACTCCTGGTAGGCCTCCTGCAGATCCTCGTACTGCGCCGTCCCCGGTGGCCGATGTGGGTCACACTCCAACGCAGCCAGAGGAACCCCAGACCTCGCGGTGATCTGGAGCGCTATCTGGTTTCCTTCGGGACAATTACACGACGAAACGTCCAAAATCTCAGTCCTTCTGTCCTCGTTTGAAAGTTATtatcaaaaacacactttaaacacCGTCTGTCTCAGCACTCAAAACGAGTGGAATGACGTGACCGCCGTAACGGAAAAAAGCGAACATGGAATATACGaacataaacaacacaataacGTAAATAACTTGTGTATACACACGCACTATATAcacttaaaagtattaattggatgatttatcaattaatttactgtatttcctcCAGTATTTTCAGCTCAAATCTCTCCGATCAGTTCTATATTTT
>TU117767
TATGTAGCGCCCCCTACCTCCTTTTATAATGGCTTAGTAAGGAGCAGCACCAGGTTCAATAAACTAATGCCTAAGAGATGGTGTATTAAAAAGGCCCCTCTGACGTCACTGAACTATATACTTTTCTTTTAGACAGTTAATCAGAATAAGATATATACTCACAGTTTGACTGATCAAGAATAAActctttagaataaataaaacacttgaagtagaagaaaataaacagaatttaattcCAGTAAATTGAAAGAGTTAGAAATAGATTAACTTTCAAGTAGAATTAAAcagtaatactataatactatcaAGTAGTATTCACACCACCAAGATGATCTCAAATTGGATACCAAGTTACCCCCAGAAAGGGAAATGTCACAAATGACTGGATAAGGGAAGTGAGCTCCGTATCAAATACACTTTGAGTTAACTGAGATAATCAACACActggtaataaaatgtatactgtaatgtgatttttgtgtaaaaataacactatgAATACTCACAAACCTAAAGCGCTGAATAACTCTGTATGAATTGATAATAAACACCGtgggcccacacacacacacacacacacactcttataacCCACACCGAAGCAGGCCTGAATCGTCGCTTGGGTACGTAGTGGCCgtggaaacagaaaaaactggcctcttcactctcctgagcagcaaacaaatgaaaaccagTGTACCTGGATTCTTTTTTGAACTGTGATACGATCGCGGAAACTCCCTGGTAGGCCTCCTGCAGATCCTCGTACTGCGCCGTCCCCGGTGGCCGATGTGGGTCACACTCCAACGCAGCCAGAGGAACCCCAGACCTCGCGGTGATCTGGAGCGCTATCTGGTTTCCTTCGGGACAATTACACGACGAAACGTCCAAAATCTCAGTCCTTCTGTCCTCGTTTCAAAGTTATTATCAAAAAACGCGCTTTAAACACCGTCTGTCTCAGC

Function

GO:

id name namespace
GO:0001558 regulation of cell growth biological_process
GO:0040008 regulation of growth biological_process

KEGG:

id description
ko04015 Rap1 signaling pathway
ko04151 PI3K-Akt signaling pathway
ko04510 Focal adhesion

RNA

RNA id representative length rna type GC content exon number start site end site
TU117766 True 1176 lncRNA 0.39 3 6340026 6733860
TU117767 False 965 lncRNA 0.41 3 6331954 6733860

Neighbor

gene id symbol gene type direction distance location
ccdc50b LOC107592910,LOC107756624,LOC107751234,LOC107654367,LOC107654434 coding downstream 400470 5916996 ~ 5931484 (-)
si:dkey-264d12.5 LOC107592908,LOC107756646,LOC107654411,LOC107654359 coding downstream 435739 5887765 ~ 5896215 (-)
LOC122353621 LOC107756649,LOC107592864,LOC107654397 coding downstream 463879 5861347 ~ 5868075 (-)
slc45a1 slc45a1,LOC107702000,LOC107654425 coding downstream 606580 5711807 ~ 5725374 (-)
errfi1a errfi1,LOC107701998,LOC107756659,LOC107592857,LOC107736087,LOC107654423,LOC107579142 coding downstream 687933 5636129 ~ 5644021 (-)
per3 per3,LOC107751173,LOC107756610,LOC107582444 coding upstream 84672 6818532 ~ 6838832 (-)
camta1b LOC107751174,LOC107654393,LOC107756644,LOC107654440,LOC107582404 coding upstream 115129 6848989 ~ 7121128 (-)
cdc42 cdc42,LOC107083933,LOC103386293,LOC100697482,LOC108435227,LOC103465423,LOC100691174,LOC101164400,LOC108248645 coding upstream 538982 7272842 ~ 7286099 (-)
c11h1orf50 zgc:112255,cunh1orf50,LOC107756638,LOC107654365,LOC107654415,LOC107565729,LOC107582467,LOC107751182 coding upstream 556750 7290610 ~ 7294450 (-)
nucks1a nucks1,nucks1a,LOC107654381,LOC107756632,LOC107654449,LOC107751185,LOC107577000 coding upstream 755423 7489283 ~ 7495714 (-)
G79577 NA non-coding downstream 64369 6267226 ~ 6267585 (-)
G79575 NA non-coding downstream 126250 6203867 ~ 6205704 (-)
G79570 NA non-coding downstream 137031 6193831 ~ 6194923 (-)
G79562 NA non-coding downstream 255563 6075763 ~ 6076391 (-)
LOC122353632 NA non-coding downstream 256994 6074276 ~ 6074960 (-)
G79768 NA non-coding upstream 534737 7268597 ~ 7327234 (-)
G79791 NA non-coding upstream 784016 7517876 ~ 7518290 (-)
G79777 NA non-coding upstream 904582 7638442 ~ 7641186 (-)
G79792 NA non-coding upstream 943382 7677242 ~ 7741498 (-)
LOC122354606 NA non-coding upstream 967565 7701425 ~ 7703761 (-)
G79565 NA other downstream 235474 6096133 ~ 6096480 (-)
mmel1 mmel1,LOC107712974,LOC107756657,LOC107654428,LOC107702001,LOC107592889 other downstream 566814 5739016 ~ 5765140 (-)
si:dkey-197i20.6 si:dkey-197i20.6,LOC107745350,LOC107710445,LOC107658773,LOC107669007,LOC107592569 other downstream 2366163 3961981 ~ 3965791 (-)
G79085 zgc:113223,LOC107745344,LOC107698001,LOC107556176 other downstream 2417319 3913248 ~ 3914635 (-)
LOC122354343 cpne5b,LOC107680428,LOC107714485,LOC107555996,LOC107699334,LOC107751002,LOC108436414 other downstream 2497031 3813505 ~ 3834923 (-)
vamp3 vamp3 other upstream 79765 6813625 ~ 6847790 (-)
phf13 LOC107756642,LOC107751178,LOC107582403 other upstream 397718 7131578 ~ 7141236 (-)
LOC122354641 svbp other upstream 419605 7153465 ~ 7155275 (-)
LOC122354401 epha8,LOC107756634,LOC107565732,LOC107654383,LOC107582396,LOC107654448 other upstream 634512 7368372 ~ 7436471 (-)
snrpe snrpe other upstream 1294746 8028606 ~ 8035551 (-)

Expression


Co-expression Network