LOC122354645


Basic Information

Item Value
gene id LOC122354645
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 7486210 ~ 7498189 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU117936
GAAAGTGCAGTGACATCAGTAGAAGTTTGAGGAGCTGTTCCTGCCGCGCAGCAGGAAGTGGGCGGGATGAGCTGTGAGAACACACACGTCTGAAAGCCACATCACAGAGACTCTACTCAATCTTCAACATTCTTCCTGGGTTTGCAGCAGGTCATGAGCTAAAGCCACTTAAAGCCCAGCACAACAGTCTTTCGCTGCAGACCCTGGAATCCTCTCTGCTCAGCAGTTATTGAAGTGAGGAGAAGGTACGTCTCCATGGCAACCAGGGTGAAATGTGACCTGGACATATGTGCTGAGATGCGTTCATGTAGGAATCTCGTTAATTTTGCACTAATGCTTTGAATggaaacattttatacatttaatggcaatttttttaaatgctccaAGAAAAACCAGTAACTGTTTGTCCATTGCTAGGCTAACAAAATGACACAAGAGGGCAGTATGGCACTGCTATGATATGATTTGCGTAGAAATTATAATCTAGTTTTGTACAGAGATAGGACTGATAATGAAGTGTtggtgtttctgtttgtttttcatctggGTTTGTTTGCAAGACCTTGTCCGTGTAATTTCTGTATGtgggtttttaatttttgtattctgCATCTGTTGTAGTCTgtttacctgaaaaaaaaaaagaaaagaaaaaaaaatattggttctaaagcaatgtttaaa
>XR_006252138.1
TGTAACGAGAGTTTCCAGGCACGCATTTGCGACGCATGTGGCATTAATTCACGTTTTAAGGGCTCGCAGACCATCGGAAGGCGGTCAGCATTTCTTTAGGATACCGAAGCTCATTTAACACGCCTCGCTTCATTATGTTTACTTGAATTAATGATCGTTAAACAGTTCCTTAATTAGCATTTCAATGAGGGTTTCATTAATACTGCAGTCTTGTCCCATTTAACCACTCAGGCCTGAGTCAGGCCTTGAGATGCTTGAAGAGCCACAAGTTACTTTTAAGCAATTAGATGGATCACAAGACTTTTTTGGATTATAatttacaatacaattataatttgaaaCCATTTGTGTGCCGTTCCTTTGTAAATACTTGtaaaatttactagcaattcgcgagtaacacattgaattaaaaactAAACGAAACAATTTTGCAGAAATACTTTCCACTCAGAAATTTTTACAAAtaggctaaattaaaaagacCTGGCAAGTAAcgcattgaattaaatgtggaatataaagaaaactggcaggggggaaaaaatgcataaaaataatactttccCCTCAGGAATCGCTAGTAAAATTTATAACAACAAAGAAATGGCAAGGAACATACTAAATAGCACTATTTCCATTTTTCAGAGCACATCatattacacaaaatacatttttgcaaaccaaaaataataattaagctcGCAAAACCAATTTCGGCGGAAATGCCTCATGTTTATAACAATAGTAAGTACTGTAGGACACTAAAATGTccgtctttattttttaatagcacTGTTTATACAcgttttattgtaaaaactgtattttttcgTCTATGGGCACTGTGGTGGATGTTTAAGGGGGGCAGCGCGGGACCATTTTACAGTCGACACATGATGAACGCGTGCGatatttttcacctttttaatCTTTCGCGGACACAAAGAACGCACGGCCGTGTGTATACTAATCCGCCGCAGCCATTTGAAATCAAAACGCGGGGCGTGAATATCAAATTTTGTGCACGTTTTCCTCATAATTCCAAACGGGAGGTGTGGTCGCTCTCAACCACCCCGCCCCCCTCGGACGTCACCCGCGTCGTGTTAATTTACCGCTAtcgaaaaaaaaatatccctcAAAACGCGCTTCCCTCCCCAAATACACCAAAGGGGCTTTCGCAATCTATTGTTTGTGCATCACTGAGTTATTTGCGCATAACAGGTTACAAAATCACTTGAGTGGGCCAATGAGCACCTTCAGTGGGATTTTATTACCCCTCCTGAAGCTTTGGCGAGGATGAATGGGAAGCCATATTCTCACTGGCTCACAAGGAAACATGAAGCCTCCGAGTGCTTCTCGCACaacaaatatattgtgaaatgtagTCTTTCGCTGCAGACCCTGGAATCCTCTCTGCTCAGCAGTTATTGAAGTGAGGAGAAGGTACGTCTCCATGGCAACCAGGGTGAAATGTGACCTGGACATATGTGCTGAGATGCGTTCATGTAGGAATCTCGTTAATTTTGCACTAATGCTTTGAATggaaacattttatacatttaatggcaatttttttaaatgctccaAGAAAAACCAGTAACTGTTTGTCCATTGCTAGGCTAACAAAATGACACAAGAGGGCAGTATGGCACTGCTATGATATGATTTGCGTAGAAATTATAATCTAGTTTTGTACAGAGATAGGACTGATAATGAAGTGTtggtgtttctgtttgtttttcatctggGTTTGTTTGCAAGACCTTGTCCGTGTAATTTCTGTATGtgggtttttaatttttgtattctgCATCTGTTGTAGTCTgttta
>XR_006252139.1
CTGTAACGAGAGTTTCCAGGCACGCATTTGCGACGCATGTGGCATTAATTCACGTTTTAAGGGCTCGCAGACCATCGGAAGGCGGTCAGCATTTCTTTAGGATACCGAAGCTCATTTAACACGCCTCGCTTCATTATGTTTACTTGAATTAATGATCGTTAAACAGTTCCTTAATTAGCATTTCAATGAGGGTTTCATTAATACTGCAGTCTTGTCCCATTTAACCACTCAGGCCTGAGTCAGGCCTTGAGATGCTTGAAGAGCCACAAGTTACTTTTAAGCAATTAGATGGATCACAAGACTTTTTTGGATTATAatttacaatacaattataatttgaaaCCATTTGTGTGCCGTTCCTTTGTAAATACTTGtaaaatttactagcaattcgcgagtaacacattgaattaaaaactAAACGAAACAATTTTGCAGAAATACTTTCCACTCAGAAATTTTTACAAAtaggctaaattaaaaagacCTGGCAAGTAAcgcattgaattaaatgtggaatataaagaaaactggcaggggggaaaaaatgcataaaaataatactttccCCTCAGGAATCGCTAGTAAAATTTATAACAACAAAGAAATGGCAAGGAACATACTAAATAGCACTATTTCCATTTTTCAGAGCACATCatattacacaaaatacatttttgcaaaccaaaaataataattaagctcGCAAAACCAATTTCGGCGGAAATGCCTCATGTTTATAACAATAGTAAGTACTGTAGGACACTAAAATGTccgtctttattttttaatagcacTGTTTATACAcgttttattgtaaaaactgtattttttcgTCTATGGGCACTGTGGTGGATGTTTAAGGGGGGCAGCGCGGGACCATTTTACAGTCGACACATGATGAACGCGTGCGatatttttcacctttttaatCTTTCGCGGACACAAAGAACGCACGGCCGTGTGTATACTAATCCGCCGCAGCCATTTGAAATCAAAACGCGGGGCGTGAATATCAAATTTTGTGCACGTTTTCCTCATAATTCCAAACGGGAGGTGTGGTCGCTCTCAACCACCCCGCCCCCCTCGGACGTCACCCGCGTCGTGTTAATTTACCGCTAtcgaaaaaaaaatatccctcAAAACGCGCTTCCCTCCCCAAATACACCAAAGGGGCTTTCGCAATCTATTGTTTGTGCATCACTGAGTTATTTGCGCATAACAGGTTACAAAATCACTTGAGTGGGCCAATGAGCACCTTCAGTGGGATTTTATTACCCCTCCTGAAGCTTTGGCGAGGATGAATGGGAAGCCATATTCTCACTGGCTCACAAGGAAACATGAAGCCTCCGAGTGCTTCTCGCACaacaaatatattgtgaaatTCTTTCGCTGCAGACCCTGGAATCCTCTCTGCTCAGCAGTTATTGAAGTGAGGAGAAGGTACGTCTCCATGGCAACCAGGGTGAAATGTGACCTGGACATATGTGCTGAGATGCGTTCATGTAGGAATCTCGTTAATTTTGCACTAATGCTTTGAATggaaacattttatacatttaatggcaatttttttaaatgctccaAGAAAAACCAGTAACTGTTTGTCCATTGCTAGGCTAACAAAATGACACAAGAGGGCAGTATGGCACTGCTATGATATGATTTGCGTAGAAATTATAATCTAGTTTTGTACAGAGATAGGACTGATAATGAAGTGTtggtgtttctgtttgtttttcatctggGTTTGTTTGCAAGACCTTGTCCGTGTAATTTCTGTATGtgggtttttaatttttgtattctgCATCTGTTGTAGTCTgttta

Function

GO:

id name namespace
GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds molecular_function
GO:0004418 hydroxymethylbilane synthase activity molecular_function

KEGG:

id description
ko00860 Porphyrin and chlorophyll metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
TU117936 False 687 lncRNA 0.40 3 7486210 7498189
XR_006252138.1 True 1833 lncRNA 0.39 3 7493784 7498134
XR_006252139.1 False 1830 lncRNA 0.39 3 7493783 7498134

Neighbor

gene id symbol gene type direction distance location
LOC122354656 epha8,LOC107756634,LOC107565732,LOC107654383,LOC107582396,LOC107654448,LOC107751217 coding upstream 7829 7460992 ~ 7478381 (+)
cldn19 cldn19,LOC107582397,LOC107751184,LOC107565733,LOC107654447 coding upstream 158973 7316449 ~ 7327237 (+)
p3h1 p3h1,LOC107756620,LOC107751183,LOC107654416,LOC107582441 coding upstream 183050 7295280 ~ 7303160 (+)
ap5b1 ap5b1,LOC107756637,LOC107654386,LOC107654446,LOC107751181,LOC107565726,LOC107580479 coding upstream 195901 7286052 ~ 7290309 (+)
wnt4 wnt4a,wnt4,LOC107565731,LOC107654388,LOC107582399 coding upstream 223738 7250585 ~ 7262472 (+)
LOC122354605 LOC107756631,LOC107654376,LOC107751186,LOC107654419,LOC107582394 coding downstream 215049 7713238 ~ 7718577 (+)
si:ch211-117k10.3 si:ch211-117k10.3,LOC107654380,LOC107573302,LOC107654420,LOC107751187,LOC107582464 coding downstream 221767 7719956 ~ 7726100 (+)
klhdc8a klhdc8a,LOC107743283,LOC107654360,LOC107581204,LOC107700004,LOC107582463 coding downstream 407097 7905286 ~ 7923424 (+)
slc41a1 slc41a1,LOC107654373,LOC107698497,LOC107751220,LOC108254937 coding downstream 434416 7932605 ~ 7957674 (+)
etnk2 etnk2,LOC107694884,LOC107751192,LOC107698335,LOC107582391,LOC106565623,LOC106583121 coding downstream 480957 7979146 ~ 7990954 (+)
G79706 epha8,LOC107654448,LOC107751217,LOC107582396,LOC107654383,LOC107565732 non-coding upstream 110536 7372912 ~ 7375674 (+)
G79707 NA non-coding upstream 113837 7349535 ~ 7372373 (+)
G79690 NA non-coding upstream 205790 7278412 ~ 7280420 (+)
G79689 NA non-coding upstream 209863 7265243 ~ 7276347 (+)
G79659 LOC107592898,LOC107751174,LOC107592897,LOC107654393 non-coding upstream 614596 6869252 ~ 6871614 (+)
G79748 NA non-coding downstream 331764 7829953 ~ 7830311 (+)
G79813 NA non-coding downstream 375600 7873789 ~ 7880398 (+)
G79863 LOC107751197,LOC107697444,LOC107582459,LOC107694863,LOC102793523,LOC103359687 non-coding downstream 703534 8201723 ~ 8202344 (+)
G79864 NA non-coding downstream 706317 8204506 ~ 8204923 (+)
G79865 NA non-coding downstream 706808 8204997 ~ 8205706 (+)
G79640 per3,LOC107751173,LOC107756610,LOC107654358 other upstream 661665 6818545 ~ 6824545 (+)
megf6b megf6b,megf6,LOC107712944,LOC107582451,LOC108431627,LOC107592884,LOC107657979 other upstream 2139378 5286439 ~ 5346832 (+)
samd13 samd13,LOC107592550 other upstream 3102231 4375839 ~ 4383979 (+)
prkacba prkacb,prkacba,LOC107745335,LOC107669012,LOC107592581 other upstream 3110822 4368425 ~ 4375388 (+)
adgrl2a adgrl2a,adgrl2 other upstream 3333619 4060929 ~ 4152591 (+)
elk4 LOC107751188,LOC107654379,LOC107756628,LOC107654450,LOC107582393,LOC107573300 other downstream 229598 7727787 ~ 7741441 (+)
bsnb LOC107743257,LOC107694876,LOC107579790,LOC107697600,LOC107751196,LOC107582388 other downstream 577230 8075419 ~ 8150569 (+)
G79889 LOC107751201,LOC107697072,LOC107743253,LOC107578868,LOC107694869 other downstream 782626 8280815 ~ 8282901 (+)
G80058 LOC107743242,LOC107659551,LOC107575478,LOC107685987,LOC107582425,LOC107751213 other downstream 1103998 8602187 ~ 8604284 (+)
G80095 grm2b,LOC107715788,LOC107575639,LOC107659540,LOC107718191,LOC107685980,LOC107582373 other downstream 1320201 8818390 ~ 8819279 (+)

Expression


Co-expression Network