snrpe (snrpe)


Basic Information

Item Value
gene id snrpe
gene name snrpe
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 8028606 ~ 8035551 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU118246
GCGCCGCCATTGAAGCAGCAGCGACCAACGTGAGATTTTCGTTGCCGCGCTAACAACTATTGCATTGAATTTGACATTTATCACtttcttctaaaaatatttggatATTGCTTGGAAGAATGGCGTACAGAGGACAAGGACAGAAGGTTCAGAAGGTTATGGTGCAGCCCATTAACCTTATTTTCAGGTATCTACAGAATCGTTCTCGAATCCAGGTCTGGCTGTATGAACAGGTCAACATGCGGATAGAAGGCTGCATCATTGGATTTGATGAATACATGAACTTGGTTTTGGATGATGCAGAGGAGGTTCACATGAAGACCAAGAACAGGAAGCCCCTGGGGCGGATTATGTTAAAAGGAGACAACATCACATTGCTGCAGAGTGTGTCCAATTGATTGTCTGTCAGGAGTTTcagatactgtttttttctgttataatgttggttttacttttgttttcatttgtcaatATTTGGTATTTTGACCCTTGTTTAAAATTGTGAAAAcctttttggtttcttttctaAATCTCAAAAATAAATTTCCACTTTTTCCACTGTTCCAGGCTACTGTCTTTAGTGTTGGAATTAAAGCAGCAAATAgcatatgaaga
>TU118247
GCGCCGCCATTGAAGCAGCAGCGACCAACGTGAGATTTTCGTTGCCGCGCTAACAACTATTGCATTGAATTTGACATTTATCACtttcttctaaaaatatttggatATTGCTTGGAAGAATGGCGTACAGAGGACAAGGACAGAAGGTTCAGAAGGTTATGGTGCAGCCCATTAACCTTATTTTCAGGTATCTACAGAATCGTTCTCGAATCCAGGTCTGGCTGTATGAACAGGTCAACATGCGGATAGAAGGCTGCATCATTGGATTTGATGAATACATGAACTTGGTTTTGGATGATGCAGAGGAGGTTCACATGAAGACCAAGAACAGGAAGCCCCTGGGGCGGATTATGTTAAAAGGAGACAACATCACATTGCTGCAGAGTGTGTCCAATTGATTGTCTGTCAGGAGTTTcagatactgtttttttctgttataatgttggttttacttttgttttcatttgtcaatATTTGGTATTTTGACCCTTGTTTAAAATTGTGAAAAcctttttggtttcttttctaAATCTCAAAAATAAATTTCCACTTTTTCCACTGaaaaaaaaaaaaaaata
>XM_043251530.1
CATTCTGCTTCCGGAATTGCGCCGCCATTGAAGCAGCAGCGACCAACGTGAGATTTTCGTTGCCGCGCTAACAACTATTGCATTGAATTTGACATTTATCACtttcttctaaaaatatttggatATTGCTTGGAAGAATGGCGTACAGAGGACAAGGACAGAAGGTTCAGAAGGTTATGGTGCAGCCCATTAACCTTATTTTCAGGTATCTACAGAATCGTTCTCGAATCCAGGTCTGGCTGTATGAACAGGTCAACATGCGGATAGAAGGCTGCATCATTGGATTTGATGAATACATGAACTTGGTTTTGGATGATGCAGAGGAGGTTCACATGAAGACCAAGAACAGGAAGCCCCTGGGGCGGATTATGTTAAAAGGAGACAACATCACATTGCTGCAGAGTGTGTCCAATTGATTGTCTGTCAGGAGTTTcagatactgtttttttctgttataatgttggttttacttttgttttcatttgtcaatATTTGGTATTTTGACCCTTGTTTAAAATTGTGAAAAcctttttggtttcttttctaAATCTCAAAAATAAATTTCCACTTTTTCCACTG

Function

symbol description
snrpe Predicted to enable RNA binding activity. Predicted to be involved in spliceosomal snRNP assembly. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in cytosol and nucleus. Predicted to be part of several cellular components, including U2-type spliceosomal complex; methylosome; and spliceosomal snRNP complex. Human ortholog(s) of this gene implicated in hepatocellular carcinoma; hypotrichosis 1; hypotrichosis 11; and lupus nephritis. Orthologous to human SNRPE (small nuclear ribonucleoprotein polypeptide E).

NR:

description
Small nuclear ribonucleoprotein E

GO:

id name namespace
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0019013 viral nucleocapsid cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0003723 RNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU118246 True 615 TUCP 0.39 5 8033930 8035533
TU118247 False 578 TUCP 0.38 6 8028606 8035533
XM_043251530.1 False 579 mRNA 0.39 5 8033984 8035551

Neighbor

gene id symbol gene type direction distance location
LOC122354498 sox13,LOC107580906,LOC107743263,LOC107751191,LOC107582435 coding downstream 8666 7993452 ~ 8019940 (-)
si:ch211-112f3.4 LOC107582165,LOC107654372,LOC107743264,LOC107751241 coding downstream 59000 7961025 ~ 7969606 (-)
cdk18 si:dkey-166c18.1,cdk18,LOC107654374,LOC107756627,LOC107698687,LOC108254840,LOC101468598 coding downstream 198368 7754526 ~ 7830238 (-)
mfsd4aa mfsd4a,LOC107756626,LOC107654377,LOC107582392,LOC107751189 coding downstream 274792 7742245 ~ 7753814 (-)
nucks1a nucks1,nucks1a,LOC107654381,LOC107756632,LOC107654449,LOC107751185,LOC107577000 coding downstream 532892 7489283 ~ 7495714 (-)
kif17 kif17 coding upstream 12192 8047743 ~ 8054838 (-)
sh2d5 sh2d5,LOC107694878,LOC107743262,LOC107580363,LOC107697739,LOC107751244 coding upstream 19416 8054967 ~ 8060059 (-)
hp1bp3 LOC107694877,LOC107579967,LOC107743260,LOC107751222,LOC107582389,LOC107699409 coding upstream 25239 8060790 ~ 8067461 (-)
il17rc NA coding upstream 171746 8207297 ~ 8216886 (-)
LOC122353662 LOC107743279,LOC107694870,LOC101884647,LOC107579820 coding upstream 195722 8231273 ~ 8233269 (-)
G79920 NA non-coding downstream 24244 7954460 ~ 8004362 (-)
G79792 NA non-coding downstream 287108 7677242 ~ 7741498 (-)
LOC122354607 NA non-coding downstream 314903 7711597 ~ 7713703 (-)
LOC122354606 NA non-coding downstream 324845 7701425 ~ 7703761 (-)
G79777 NA non-coding downstream 387420 7638442 ~ 7641186 (-)
G79948 NA non-coding upstream 61793 8097344 ~ 8150834 (-)
G79957 NA non-coding upstream 108412 8143963 ~ 8144953 (-)
G79965 LOC107582387 non-coding upstream 149782 8185333 ~ 8191088 (-)
G79968 NA non-coding upstream 167844 8203395 ~ 8204235 (-)
G79969 NA non-coding upstream 182192 8217743 ~ 8218050 (-)
LOC122354401 epha8,LOC107756634,LOC107565732,LOC107654383,LOC107582396,LOC107654448 other downstream 592135 7368372 ~ 7436471 (-)
LOC122354641 svbp other downstream 873331 7153465 ~ 7155275 (-)
phf13 LOC107756642,LOC107751178,LOC107582403 other downstream 887370 7131578 ~ 7141236 (-)
vamp3 vamp3 other downstream 1180816 6813625 ~ 6847790 (-)
G79565 NA other downstream 1932126 6096133 ~ 6096480 (-)
G79947 LOC107694876,LOC107743257,LOC107579790,LOC107751196 other upstream 56849 8092400 ~ 8143620 (-)
G79967 NA other upstream 160267 8195818 ~ 8196385 (-)
LOC122354197 LOC107694863,LOC107582459,LOC107751197,LOC107697444,LOC107581824 other upstream 160921 8196472 ~ 8206841 (-)
LOC122353694 NA other upstream 456220 8491771 ~ 8497285 (-)
LOC122354572 NA other upstream 473108 8508659 ~ 8520020 (-)

Expression


Co-expression Network