G80042


Basic Information

Item Value
gene id G80042
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 8555431 ~ 8662482 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU118415
TGCTTATGACatctgaatgggtgccgtcagcttTTTACTTCATAAGGCATACATTTACGGACTGGAGTTGTGTGcataaatgtgatgttttatcagctgtttggactctcattctaaTGGCACCCATTGACTGAACAGGATCCAttgttgagcaagtgatgtaatttcTCCAAACTTCttatataaaacaaactcatctacattttaaatagcatgAGTGTGAGtacacttttgggtgaactattcctttaaacataCGCTTTGTAACCTTTGCAGTGTCCTGTGGAAGAACATTGTAGTTACTTCATTCTGTTTATGTATGACACATTATTCAAGTAATGGGCTTCTCTGCCACAGCTGACTTctaaaatattccaaatataaacatttattattggtGTAACATAGTGATTCAGGGAAAGACAAAAAAGTTATATAGTATATCTTTAACTTTGGCATCTGCGCCAACAACAACCTTTACTGTAATGCAGTAACTCATAAGTTTATTGCAGTAACTCACCTGCTGTCATGCTCCATGTGGCATTGAGTTGTGACAGATGAGTAGATTCTACAATGTAGCAGTTCAGTACATCAAacaattatcaaataaaaactgatttagtTCTTATATACTTGACTTTAAGGCGAGACAAtatgttatgttaaaaatatgttttgtattgctaagaaagtgctatcaaaacaaacacttctgtcttttgcatgttttctttctactattctaaaaatattttatgaaaaaacaaaaaaacccaAAATCTCAAATTTGACAGGTGCATGGAAAAACAGGGTTTTTGCATGCAGTGTTTCCCTGTCAGGGATATGGACCTAATTTCCTTGTTTCTGTAGTGTTTTTCCCTCCCCATGTGTTCCat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU118415 True 896 lncRNA 0.35 3 8555431 8662482

Neighbor

gene id symbol gene type direction distance location
cacna2d3 cacna2d3,LOC107751209,LOC107582378,LOC107743247 coding upstream 69841 8440711 ~ 8485590 (+)
cacna1da cacna1da,LOC107743249 coding upstream 120212 8348650 ~ 8435219 (+)
ninj1 si:ch1073-278o19.1,LOC107579083,LOC107694872,LOC107751205,LOC107696824 coding upstream 253453 8294876 ~ 8301978 (+)
LOC122354006 LOC107697231,LOC107582385,LOC107694862,LOC107581815,LOC107579335,LOC107751199 coding upstream 325845 8223356 ~ 8229586 (+)
erc2 erc2,LOC107694874,LOC107699320,LOC107582387 coding upstream 354162 8153932 ~ 8201269 (+)
usp48 usp48,LOC107743244,LOC107659552,LOC107685991,LOC107751212,LOC107582377,LOC107581757 coding downstream 46819 8709301 ~ 8718145 (+)
zbtb40 LOC107575478,LOC107659551,LOC107743242,LOC107685987,LOC107751213,LOC107582425 coding downstream 56956 8719438 ~ 8729558 (+)
psma5 psma5 coding downstream 90574 8753056 ~ 8757807 (+)
sort1a sort1a,LOC107659546,LOC107685983,LOC107582375,LOC107715784,LOC107718224 coding downstream 96303 8758785 ~ 8778563 (+)
nfya nfya,LOC107715785,LOC107685981,LOC107576873,LOC107659544,LOC107582374,LOC107718225 coding downstream 116612 8779094 ~ 8786060 (+)
G80032 NA non-coding upstream 39207 8510249 ~ 8516224 (+)
LOC122353642 NA non-coding upstream 67538 8486482 ~ 8487893 (+)
G79908 NA non-coding upstream 227323 8326490 ~ 8328108 (+)
G79887 LOC107743253,LOC107578868,LOC107694869 non-coding upstream 275677 8279361 ~ 8279754 (+)
G79860 LOC107581815,LOC107694862 non-coding upstream 287166 8267791 ~ 8268265 (+)
LOC122354296 NA non-coding downstream 160602 8823084 ~ 8824181 (+)
G80120 NA non-coding downstream 278602 8941084 ~ 8941521 (+)
G80119 NA non-coding downstream 325144 8987626 ~ 9030946 (+)
LOC122354434 NA non-coding downstream 350278 9012760 ~ 9050856 (+)
G80272 NA non-coding downstream 589312 9251794 ~ 9254355 (+)
G79889 LOC107751201,LOC107697072,LOC107743253,LOC107578868,LOC107694869 other upstream 272530 8280815 ~ 8282901 (+)
bsnb LOC107743257,LOC107694876,LOC107579790,LOC107697600,LOC107751196,LOC107582388 other upstream 404862 8075419 ~ 8150569 (+)
elk4 LOC107751188,LOC107654379,LOC107756628,LOC107654450,LOC107582393,LOC107573300 other upstream 813990 7727787 ~ 7741441 (+)
G79640 per3,LOC107751173,LOC107756610,LOC107654358 other upstream 1730886 6818545 ~ 6824545 (+)
megf6b megf6b,megf6,LOC107712944,LOC107582451,LOC108431627,LOC107592884,LOC107657979 other upstream 3208599 5286439 ~ 5346832 (+)
G80095 grm2b,LOC107715788,LOC107575639,LOC107659540,LOC107718191,LOC107685980,LOC107582373 other downstream 155908 8818390 ~ 8819279 (+)
brk1 brk1,BRK1,LOC106565571 other downstream 212806 8875288 ~ 8878988 (+)
setmar setmar,LOC107686011,LOC107718240,LOC107659535 other downstream 217101 8879583 ~ 8881656 (+)
itpr1b itpr1,LOC107685975,LOC107659525 other downstream 228968 8891450 ~ 8979241 (+)
chchd4a chchd4a,chchd4,LOC107574929,LOC107715767 other downstream 760468 9422950 ~ 9425302 (+)

Expression


Co-expression Network