chchd4a (chchd4a,chchd4,LOC107574929,LOC107715767)


Basic Information

Item Value
gene id chchd4a
gene name chchd4a,chchd4,LOC107574929,LOC107715767
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 9422950 ~ 9425302 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU118824
CCGGCAGTGACGTCACGTGGCTGCCGTCGCTGCCTCCATGCTGGATTTGATGTAACAGGCGTGTGGATTGATCATTGTGCCGGTGTTTGAGATTCATTGCTCGGATAAACGGCGGTCAGACGGAGCTGTCAGCAGACATGTCGTACTGCAAGCAGGAAGGTAAAGATCGCATCATATTTGTCACCAAGGAGGATCATGAAGCGCCCAGTAATGCTGAGCTTATCGAAGATGATCCAAATGATCCGTATGAGGATCACGG
>XM_043251512.1
GTGACGTCACGTGGCTGCCGTCGCTGCCTCCATGCTGGATTTGATGTAACAGGCGTGTGGATTGATCATTGTGCCGGTGTTTGAGATTCATTGCTCGGATAAACGGCGGTCAGACGGAGCTGTCAGCAGACATGTCGTACTGCAAGCAGGAAGGTAAAGATCGCATCATATTTGTCACCAAGGAGGATCATGAAGCGCCCAGTAATGCTGAGCTTATCGAAGATGATCCAAATGATCCGTATGAGGATCACGGTCTTATTCTCCCTAATGGTGATATAAACTGGAACTCCTGTGTTTGGGGTATGGCCAGTGGCCCTTGTGGACAGCAGTTCAAAGACGCCTTTTCTTGTTTCCACTATAGTAAAGAGGAAGTAAAGGTGGATTGTGTGGAAAACTTCCATATGCAGGAGTGTATGCAGAAGTACCCTGAGCTCTACCCTCAGGAAGATGACAGTGACAGCGCCCCCTCTGATGGGGCAGATACTGCGCCCGCTGACTCTGTCCCTACAGTCTCTCCTGAATCCACACCGGCAAGCACAGAAAACCCAGCGACTAGCTAATGTTATTTTGACTTCGTTCCCTTGAAACCTCACCGCAAAGACAGCTCCACTTTTAAGTATGAAGAGATAATATCACTGGATCGATGCTCTCCGCCTGACCGCATGATGCACAGAGATGCAGGGAGCCCTTAAATGTCCAGCTTTgtgatttaaataatcaaatgacTTTAACACGCACTTAAGGGACCTATTAAAAGAA

Function

symbol description
chchd4a Predicted to enable protein-disulfide reductase activity. Predicted to be involved in 'de novo' posttranslational protein folding; mitochondrion organization; and protein maturation by protein folding. Predicted to act upstream of or within protein transport. Predicted to be located in mitochondrion. Predicted to be active in mitochondrial intermembrane space. Is expressed in brain; eye; head; liver; and somite. Orthologous to human CHCHD4 (coiled-coil-helix-coiled-coil-helix domain containing 4).
chchd4 Enables protein-disulfide reductase activity. Involved in several processes, including mitochondrion organization; peptidyl-cysteine oxidation; and protein maturation by protein folding. Located in mitochondrial intermembrane space.

NR:

description
mitochondrial intermembrane space import and assembly protein 40-like

GO:

id name namespace
GO:0022417 protein maturation by protein folding biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0051084 'de novo' posttranslational protein folding biological_process
GO:0045041 protein import into mitochondrial intermembrane space biological_process
GO:0005758 mitochondrial intermembrane space cellular_component
GO:0015035 protein disulfide oxidoreductase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU118824 False 259 lncRNA 0.51 2 9422950 9424687
XM_043251512.1 True 759 mRNA 0.48 6 9422956 9425302

Neighbor

gene id symbol gene type direction distance location
LOC122353647 LOC107718244,LOC107715798,LOC107686009,LOC107575380,LOC107551786,LOC107677506 coding upstream 156251 9261940 ~ 9266699 (+)
sema3fb LOC107715794,LOC107659533,LOC107575741,LOC107685972,LOC107572222 coding upstream 281021 9084641 ~ 9141929 (+)
arl8bb LOC107573080,LOC105934196,LOC107715779,LOC107659529,LOC107095653,LOC107577661,LOC107685974 coding upstream 413713 9004080 ~ 9009237 (+)
bhlhe40 bhlhe40,LOC107577974,LOC107715793,LOC107659534,LOC107685973,LOC107718198,LOC107573081 coding upstream 422320 8997857 ~ 9000630 (+)
gpx1a gpx1a,LOC107577558,LOC107685977,LOC107718196 coding upstream 548249 8872791 ~ 8874701 (+)
dnah1 dnah1 coding downstream 18516 9443818 ~ 9474222 (+)
mapkapk3 mapkapk3,LOC106525176,LOC107677509,LOC107574676,LOC107551779 coding downstream 50209 9475511 ~ 9491017 (+)
pfkfb4a pfkfb4a,LOC107715804,LOC107574463,LOC107718206,LOC107685962,LOC107677511,LOC107551799 coding downstream 68337 9493639 ~ 9505428 (+)
xxylt1 xxylt1,LOC107677510,LOC107715806,LOC107718247,LOC107685961,LOC107581703 coding downstream 115257 9540559 ~ 9579355 (+)
lsg1 lsg1,LOC107573872,LOC107677512,LOC107551801,LOC107685959 coding downstream 219416 9644718 ~ 9649706 (+)
G80296 NA non-coding upstream 290 9369069 ~ 9422660 (+)
G80277 NA non-coding upstream 50191 9356422 ~ 9372759 (+)
G80282 NA non-coding upstream 104709 9316916 ~ 9318241 (+)
G80272 NA non-coding upstream 168595 9251794 ~ 9254355 (+)
LOC122354434 NA non-coding upstream 372094 9012760 ~ 9050856 (+)
G80335 NA non-coding downstream 83069 9508371 ~ 9512440 (+)
G80340 NA non-coding downstream 156785 9582087 ~ 9582653 (+)
G80341 NA non-coding downstream 157448 9582750 ~ 9583187 (+)
G80343 NA non-coding downstream 160908 9586210 ~ 9586452 (+)
G80344 NA non-coding downstream 161898 9587200 ~ 9587461 (+)
itpr1b itpr1,LOC107685975,LOC107659525 other upstream 443709 8891450 ~ 8979241 (+)
setmar setmar,LOC107686011,LOC107718240,LOC107659535 other upstream 541294 8879583 ~ 8881656 (+)
brk1 brk1,BRK1,LOC106565571 other upstream 543962 8875288 ~ 8878988 (+)
G80095 grm2b,LOC107715788,LOC107575639,LOC107659540,LOC107718191,LOC107685980,LOC107582373 other upstream 603671 8818390 ~ 8819279 (+)
G80058 LOC107743242,LOC107659551,LOC107575478,LOC107685987,LOC107582425,LOC107751213 other upstream 818666 8602187 ~ 8604284 (+)
pik3ca pik3ca,LOC107574159,LOC107685965 other downstream 96496 9521798 ~ 9540121 (+)
G80551 LOC107659525,LOC107581741,LOC107718227,LOC107685975,LOC107573079,LOC103355429 other downstream 1041320 10466622 ~ 10471187 (+)
G80638 NA other downstream 1215830 10641132 ~ 10661970 (+)
G80761 NA other downstream 1797045 11222347 ~ 11226622 (+)
LOC122354145 pfkl,pfklb,LOC107564579,LOC108444469 other downstream 2080351 11505653 ~ 11507771 (+)

Expression


Co-expression Network