CI01000000_14857956_14858702 (NXT2)


Basic Information

Item Value
gene id CI01000000_14857956_14858702
gene name NXT2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 14857956 ~ 14858783 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000000_14857956_14858702.mRNA
ATGGCTGCTGTAACGGTGGACTTCAGGGTTCAAGTTGATCAGTCATGCAGATACTCGGAGGAATTCGTCAATATCTATTATGACTGTATGGATAAGAAAAGAAGGAATCTGACGAGGCTGTATCTGGACAAAGCTACGCTAGTGTGGAATGGCAATGCTGTCACAGGTCAAGATGCTCTCGGCGAGTTCTTTGAGTCTCTTCCCTCCAGCGAGTTTCAGGTTCACACTCTCGACTGCCAGCCTGTGCATGAACAAGCAACTCAGGGCCAAACAACTTTGTTGGTGGTTACAGCAGGCTCAGTGAAGTTTGAAGGAAACAAACAGAGATACTTTAACCAGAATTTCCTATTAACTGCCCAAGCCTCTCCTAACAGTGACCAGCCGGTATGGAAGATCGCAAGCGATTGTTTTCGCTTTCAAGACTGGGCAAACTGAATTGTAGCTTCAACTTTTTGTATAGCTTTTGTTTTGTGTTCTTTCTTCTTTTGTACACTCACTGCAATTGATGTACTGTAA

Function

symbol description
nxt2 Acts upstream of or within heart development and mRNA transport. Predicted to be part of nuclear pore central transport channel. Orthologous to several human genes including NXT2 (nuclear transport factor 2 like export factor 2).

GO:

id name namespace
GO:0007507 heart development biological_process

KEGG:

id description
K14285 NXT1_2, P15; NTF2-related export protein 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000000_14857956_14858702.mRNA True 516 mRNA 0.44 4 14857956 14858783

Neighbor

gene id symbol gene type direction distance location
CI01000000_14837947_14838141 NA coding upstream 19634 14837902 ~ 14838322 (+)
CI01000000_14801105_14802738 INSB coding upstream 55182 14800874 ~ 14802774 (+)
CI01000000_14718151_14741998 NA coding upstream 115765 14717805 ~ 14742191 (+)
CI01000000_14178546_14189186 NA coding upstream 668625 14178363 ~ 14189331 (+)
CI01000000_14143399_14175045 NA coding upstream 682602 14127685 ~ 14175354 (+)
CI01000000_14882756_14886030 NEK12 coding downstream 23973 14882756 ~ 14886132 (+)
CI01000000_15091223_15092317 NA coding downstream 232226 15091009 ~ 15092571 (+)
CI01000000_15120586_15123050 TSC22D3, TSC22D3.L coding downstream 261601 15120384 ~ 15123648 (+)
CI01000000_15158265_15165627 NA coding downstream 298239 15157022 ~ 15166585 (+)
CI01000000_15519933_15528742 PCDH11X, PCDH11 coding downstream 661150 15519933 ~ 15528895 (+)
G9404 NA non-coding upstream 8576 14849134 ~ 14849380 (+)
G9390 NA non-coding upstream 16264 14775956 ~ 14841692 (+)
G9406 NA non-coding upstream 17667 14828091 ~ 14840289 (+)
G9395 NA non-coding upstream 37434 14819003 ~ 14820522 (+)
G9385 NA non-coding upstream 104089 14753623 ~ 14753867 (+)
G9466 NA non-coding downstream 107616 14966399 ~ 14969396 (+)
G10004 NA non-coding downstream 506285 15365068 ~ 15365385 (+)
G10009 NA non-coding downstream 528811 15387594 ~ 15387826 (+)
G10010 NA non-coding downstream 530950 15389733 ~ 15389999 (+)
G9201 NA other upstream 623015 14215024 ~ 14234941 (+)
G7522 NA other upstream 2678948 12178369 ~ 12179008 (+)
G7514 NA other upstream 2720948 12136522 ~ 12137008 (+)
G7153 NA other upstream 3612323 11244457 ~ 11245633 (+)
G7018 NA other upstream 3877084 10978489 ~ 10980872 (+)
G10201 NA other downstream 1071483 15930266 ~ 15930562 (+)
CI01000000_17339270_17345013 CXCL14, CXL14 other downstream 2480371 17339154 ~ 17346200 (+)
G11465 NA other downstream 3025170 17883953 ~ 17887462 (+)
G11521 NA other downstream 3173956 18032739 ~ 18164112 (+)
G11801 NA other downstream 3822084 18674116 ~ 18745376 (+)

Expression


Co-expression Network