LOC122354145 (pfkl,pfklb,LOC107564579,LOC108444469)


Basic Information

Item Value
gene id LOC122354145
gene name pfkl,pfklb,LOC107564579,LOC108444469
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 11505653 ~ 11507771 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU119266
GGAGAGAGTGAGCAGCTTTCGGAGGAGTCGGTGCGCGGCGGAGCGGCGTGTTTTCGGGCGTTCAGGGCTGATATCTGCGGTCTTCCATCATGCATGTGGACTTCGAGAAGCTGCGGATGAGCGGCGCGGGGAAAGCCATCGCGGTGCTGACGAGCGGCGGAGACGCGCAGGGTATGAACGCCGCCGTCCGCGCTGTAACACGCATGGGCATTTACGTGGGCGCTAAGGTCTACCTGATTTACGAGggttatcagGGTCTGGTGGACGGAGGAGATCACATCAAACTCGCCAACTGGCAGAGCGTCACCAACATCATCCAGCTGGTGAGACGTGCTTTCAGTGCGTGTGAAAATCACTCAGACAGAAACTCCACGAAGAACAAAAAAGGttgattaataacaaaatagaGTCGGATGGagtcatattttaattacagataaagacaaatataataattttatgaaaatgctCTATTTATTGtcaatgctatatatatatatatatatatatatatatatatatatatata
>TU119267
GGAGAGAGTGAGCAGCTTTCGGAGGAGTCGGTGCGCGGCGGAGCGGCGTGTTTTCGGGCGTTCAGGGCTGATATCTGCGGTCTTCCATCATGCATGTGGACTTCGAGAAGCTGCGGATGAGCGGCGCGGGGAAAGCCATCGCGGTGCTGACGAGCGGCGGAGACGCGCAGGGTATGAACGCCGCCGTCCGCGCTGTAACACGCATGGGCATTTACGTGGGCGCTAAGGTCTACCTGATTTACGAGggttatcagGGTCTGGTGGACGGAGGAGATCACATCAAACTCGCCAACTGGCAGAGCGTCACCAACATCATCCAGCTGGTGAGACGTGCTTTCAGTGCGTGTGAAAATCACTCAGACAGAAACTCCACGAAGAACAAAAAAGGttgattaataacaaaatagaGTCGGATGGAGGGCTTGAGGAAATGCTAGAAATATGGAGCAagtcatattttaattacagataaagacaaatataataattttatgaaaatgctCTATTTATTGtcaatgctatatatatatatatatatatatatatatatatatatatata
>XM_043252195.1
GAGCTCCGCGGAGTTCGTGCGCTGCGTGAGGAGAGAGTGAGCAGCTTTCGGAGGAGTCGGTGCGCGGCGGAGCGGCGTGTTTTCGGGCGTTCAGGGCTGATATCTGCGGTCTTCCATCATGCATGTGGACTTCGAGAAGCTGCGGATGAGCGGCGCGGGGAAAGCCATCGCGGTGCTGACGAGCGGCGGAGACGCGCAGGGTATGAACGCCGCCGTCCGCGCTGTAACACGCATGGGCATTTACGTGGGCGCTAAGGTCTACCTGATTTACGAGggttatcagGGTCTGGTGGACGGAGGAGATCACATCAAACTCGCCAACTGGCAGAGCGTCACCAACATCATCCAGCTGGTGAGACGTGCTTTCAGTGCGTGTGAAAATCACTCAGACAGAAACTCCACGAAGAACAAAAAAGGttgattaataacaaaatagaGTCGGATGGAGGGCTTGAGGAAATGCTAGAAATATGGAGCAagtcatattttaattacagataaagacaaatataataattttatgaaaatgctCTATT

Function

symbol description
pfklb Predicted to enable several functions, including 6-phosphofructokinase activity; anion binding activity; and identical protein binding activity. Predicted to be involved in canonical glycolysis; fructose 1,6-bisphosphate metabolic process; and fructose 6-phosphate metabolic process. Predicted to act upstream of or within glycolytic process. Predicted to be located in cytoplasm. Predicted to be part of 6-phosphofructokinase complex. Predicted to be active in membrane. Is expressed in liver; male organism; nervous system; somite; and yolk syncytial layer. Orthologous to human PFKL (phosphofructokinase, liver type).
pfkl Enables several functions, including 6-phosphofructokinase activity; anion binding activity; and fructose binding activity. Involved in several processes, including fructose 1,6-bisphosphate metabolic process; fructose 6-phosphate metabolic process; and glycolytic process. Located in cytosol; extracellular exosome; and membrane. Part of 6-phosphofructokinase complex.

NR:

description
PREDICTED: ATP-dependent 6-phosphofructokinase, liver type

GO:

id name namespace
GO:0006096 glycolytic process biological_process
GO:0006002 fructose 6-phosphate metabolic process biological_process
GO:0005945 6-phosphofructokinase complex cellular_component
GO:0003872 6-phosphofructokinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU119266 False 529 TUCP 0.47 4 11505682 11507771
TU119267 True 561 TUCP 0.47 3 11505682 11507771
XM_043252195.1 False 536 mRNA 0.52 3 11505653 11507717

Neighbor

gene id symbol gene type direction distance location
orc2 orc2,LOC107702034,LOC107702742,LOC107564576,LOC107740071,LOC107564577 coding upstream 5731 11486516 ~ 11499922 (+)
ldb1b LOC107702035,LOC107564569,LOC107713246,LOC108444470,LOC107700700,LOC107567630 coding upstream 20171 11470319 ~ 11485482 (+)
cant1b cant1b,LOC107702024,LOC107700370,LOC107567625 coding upstream 71129 11424607 ~ 11434524 (+)
afmid afmid coding upstream 81439 11417605 ~ 11424214 (+)
syngr2b syngr2b,LOC107702021,LOC107713240,LOC107564563,LOC107700198 coding upstream 101104 11397046 ~ 11404549 (+)
LOC122354143 pfklb,pfkl,LOC108444469 coding downstream 4562 11512333 ~ 11523658 (+)
opn6a LOC107740064,LOC107567633,LOC107702020 coding downstream 31907 11539678 ~ 11547713 (+)
map1lc3c map1lc3c,LOC107701141,LOC107702025 coding downstream 90019 11597790 ~ 11599698 (+)
tbce LOC107715672,LOC107661157,LOC107713241,LOC107574186,LOC107701315,LOC107740075,LOC107564754 coding downstream 198337 11706108 ~ 11715351 (+)
si:ch1073-365p7.2 NA coding downstream 274888 11782659 ~ 11794097 (+)
G80804 NA non-coding upstream 33352 11471971 ~ 11472301 (+)
G80668 NA non-coding upstream 53515 11449049 ~ 11452138 (+)
LOC122353945 NA non-coding upstream 58132 11443640 ~ 11447521 (+)
G80667 LOC107567635 non-coding upstream 66927 11437907 ~ 11438726 (+)
G80784 NA non-coding upstream 177975 11326427 ~ 11327678 (+)
G80808 NA non-coding downstream 229 11508000 ~ 11509053 (+)
G80809 NA non-coding downstream 3703 11511474 ~ 11511894 (+)
G80814 NA non-coding downstream 41844 11549615 ~ 11555713 (+)
G80819 NA non-coding downstream 49191 11556962 ~ 11559047 (+)
G80825 NA non-coding downstream 63331 11571102 ~ 11571431 (+)
G80761 NA other upstream 279031 11222347 ~ 11226622 (+)
G80638 NA other upstream 843683 10641132 ~ 10661970 (+)
G80551 LOC107659525,LOC107581741,LOC107718227,LOC107685975,LOC107573079,LOC103355429 other upstream 1034466 10466622 ~ 10471187 (+)
pik3ca pik3ca,LOC107574159,LOC107685965 other upstream 1965532 9521798 ~ 9540121 (+)
chchd4a chchd4a,chchd4,LOC107574929,LOC107715767 other upstream 2080351 9422950 ~ 9425302 (+)
rpl37a rpl37a,RPL37A,zgc:171772,LOC107564751,LOC107567628 other downstream 17252 11525023 ~ 11527042 (+)
eif4a3 eif4a3,LOC107702040 other downstream 20948 11528719 ~ 11535114 (+)
LOC122354243 irf2bp2b,LOC107713243,LOC107564749,LOC107567632,LOC107683260,LOC107740065 other downstream 72255 11580026 ~ 11672957 (+)
tomm20b tomm20b,tomm20,LOC107740066,LOC107701232,LOC107661159,LOC107713233 other downstream 190553 11698324 ~ 11700214 (+)
LOC122353861 gpr137b,LOC107740081,LOC107558369,LOC107703026,LOC107713226,LOC105890320,LOC101884293 other downstream 244774 11752545 ~ 12870121 (+)

Expression


Co-expression Network