rpl37a (rpl37a,RPL37A,zgc:171772,LOC107564751,LOC107567628)


Basic Information

Item Value
gene id rpl37a
gene name rpl37a,RPL37A,zgc:171772,LOC107564751,LOC107567628
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 11525023 ~ 11527042 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU119512
GCAAAACCGCGCATGCGCAGTGGCTCGCTCTCTTTTGGATCGGCACCTCTTCTGCTAAAATGGCCAAGCGCACCAAGAAGGTGGGGATTGTGGGGAAGTACGGCACCCGTTACGGAGCGTCCCTCAGGAAGATGGTGAAGAAGATCGAGATCAGCCAGCACTCGAAATACACCTGCTCCTTCTGCGGCAAGACTAAGATGAAGAGAAAGGCTGTAGGGATCTGGCACTGCGGCTCCTGCATGAAAACCGTGGCCGGAGGTGCCTGGACGTACAACACGACGTCCGCCGTCACGGTCAAGTCTGCCATCAAGCGTCTGAAGGAGCTGAAGGACCAGTAAACCGGACCCTGTTTTCTACTCgttcacttcttTCTTATTTCAGCGCTTGAGTTCGGTTCTGACCCTGATCGCTGGGAAGCTGGAACGGCGTTAAATGCGAACAAGAaggttttgtgaaaaataaataca
>XM_043251321.1
TCCGGTCGCTATCCCATAATGCACGCGTCCGAGCTGGCAAAACCGCGCATGCGCAGTGGCTCGCTCTCTTTTGGATCGGCACCTCTTCTGCTAAAATGGCCAAGCGCACCAAGAAGGTGGGGATTGTGGGGAAGTACGGCACCCGTTACGGAGCGTCCCTCAGGAAGATGGTGAAGAAGATCGAGATCAGCCAGCACTCGAAATACACCTGCTCCTTCTGCGGCAAGACTAAGATGAAGAGAAAGGCTGTAGGGATCTGGCACTGCGGCTCCTGCATGAAAACCGTGGCCGGAGGTGCCTGGACGTACAACACGACGTCCGCCGTCACGGTCAAGTCTGCCATCAAGCGTCTGAAGGAGCTGAAGGACCAGTAAACCGGACCCTGTTTTCTACTCgttcacttctttctttctgtggcTCGACGGAACCTCTCGTAATAAACCTGAGCGTTGAGCCGGA

Function

symbol description
zgc:171772 Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Orthologous to human RPL37A (ribosomal protein L37a).
rpl37a A structural constituent of ribosome. Predicted to be involved in cytoplasmic translation. Located in cytosolic ribosome. Part of cytosolic large ribosomal subunit.

NR:

description
PREDICTED: 60S ribosomal protein L37a

GO:

id name namespace
GO:0006614 SRP-dependent cotranslational protein targeting to membrane biological_process
GO:0006413 translational initiation biological_process
GO:0006414 translational elongation biological_process
GO:0006415 translational termination biological_process
GO:0019083 viral transcription biological_process
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay biological_process
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU119512 True 467 TUCP 0.53 5 11525059 11527042
XM_043251321.1 False 459 mRNA 0.56 4 11525023 11526933

Neighbor

gene id symbol gene type direction distance location
LOC122354143 pfklb,pfkl,LOC108444469 coding upstream 1365 11512333 ~ 11523658 (+)
orc2 orc2,LOC107702034,LOC107702742,LOC107564576,LOC107740071,LOC107564577 coding upstream 25101 11486516 ~ 11499922 (+)
ldb1b LOC107702035,LOC107564569,LOC107713246,LOC108444470,LOC107700700,LOC107567630 coding upstream 39541 11470319 ~ 11485482 (+)
cant1b cant1b,LOC107702024,LOC107700370,LOC107567625 coding upstream 90499 11424607 ~ 11434524 (+)
afmid afmid coding upstream 100809 11417605 ~ 11424214 (+)
opn6a LOC107740064,LOC107567633,LOC107702020 coding downstream 12636 11539678 ~ 11547713 (+)
map1lc3c map1lc3c,LOC107701141,LOC107702025 coding downstream 70748 11597790 ~ 11599698 (+)
tbce LOC107715672,LOC107661157,LOC107713241,LOC107574186,LOC107701315,LOC107740075,LOC107564754 coding downstream 179066 11706108 ~ 11715351 (+)
si:ch1073-365p7.2 NA coding downstream 255617 11782659 ~ 11794097 (+)
mfn1b mfn1b,LOC107661155,LOC107701405,LOC107706807,LOC107552408,LOC108443893,LOC108270971 coding downstream 268493 11795535 ~ 11811706 (+)
G80809 NA non-coding upstream 13129 11511474 ~ 11511894 (+)
G80808 NA non-coding upstream 15970 11508000 ~ 11509053 (+)
G80804 NA non-coding upstream 52722 11471971 ~ 11472301 (+)
G80668 NA non-coding upstream 72885 11449049 ~ 11452138 (+)
LOC122353945 NA non-coding upstream 77502 11443640 ~ 11447521 (+)
G80814 NA non-coding downstream 22573 11549615 ~ 11555713 (+)
G80819 NA non-coding downstream 29920 11556962 ~ 11559047 (+)
G80825 NA non-coding downstream 44060 11571102 ~ 11571431 (+)
G80860 NA non-coding downstream 155882 11682924 ~ 11683244 (+)
G80861 NA non-coding downstream 156418 11683460 ~ 11683944 (+)
LOC122354145 pfkl,pfklb,LOC107564579,LOC108444469 other upstream 17252 11505653 ~ 11507771 (+)
G80761 NA other upstream 298401 11222347 ~ 11226622 (+)
G80638 NA other upstream 863053 10641132 ~ 10661970 (+)
G80551 LOC107659525,LOC107581741,LOC107718227,LOC107685975,LOC107573079,LOC103355429 other upstream 1053836 10466622 ~ 10471187 (+)
pik3ca pik3ca,LOC107574159,LOC107685965 other upstream 1984902 9521798 ~ 9540121 (+)
eif4a3 eif4a3,LOC107702040 other downstream 1677 11528719 ~ 11535114 (+)
LOC122354243 irf2bp2b,LOC107713243,LOC107564749,LOC107567632,LOC107683260,LOC107740065 other downstream 52984 11580026 ~ 11672957 (+)
tomm20b tomm20b,tomm20,LOC107740066,LOC107701232,LOC107661159,LOC107713233 other downstream 171282 11698324 ~ 11700214 (+)
LOC122353861 gpr137b,LOC107740081,LOC107558369,LOC107703026,LOC107713226,LOC105890320,LOC101884293 other downstream 225503 11752545 ~ 12870121 (+)
shroom2b LOC107661152,LOC107552394,LOC107740069,LOC107705119,LOC107558375,LOC107702184 other downstream 300836 11827878 ~ 11857319 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G431428 NA unknown CI01000306 null 448704 ~ 483649 (-)