eif4a3 (eif4a3,LOC107702040)


Basic Information

Item Value
gene id eif4a3
gene name eif4a3,LOC107702040
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 11528719 ~ 11535114 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU119513
CGTCACAGCTGCGACACACGCGGCTCTTCCGTTCGGCCTGCAGACGCGCTTTCACGTTTTAACTCGTAATTTATAACCGAAATCCGTGATAATTATGGCCGCCGCCGCAGCTCCCGTGAGGAAGAGGATCCTGAAGGAGGAGGACATGACGAAGATCGAGTTTGAGACGAGCGAGGAGGTGGATGTGACGCCGACGTTTGACACGATGGGCCTGAGGGAAGACTTACTGCGCGGGATCTACGCGTACGGTTTTGAGAAACCATCTGCGATCCAGCAGCGAGCCATCAAACAGATCATCAAGGGACGAGACGTCATCGCCCAGTGAGTCCTGCTGGAGATCTGTTCTGGAGAAAGGAG
>XM_043252731.1
GTCTCCTGCTTTGTGCGTCACAGCTGCGACACACGCGGCTCTTCCGTTCGGCCTGCAGACGCGCTTTCACGTTTTAACTCGTAATTTATAACCGAAATCCGTGATAATTATGGCCGCCGCCGCAGCTCCCGTGAGGAAGAGGATCCTGAAGGAGGAGGACATGACGAAGATCGAGTTTGAGACGAGCGAGGAGGTGGATGTGACGCCGACGTTTGACACGATGGGCCTGAGGGAAGACTTACTGCGCGGGATCTACGCGTACGGTTTTGAGAAACCATCTGCGATCCAGCAGCGAGCCATCAAACAGATCATCAAGGGACGAGACGTCATCGCCCAGTGAGTCCTGCTGGAGATCTGTTCTGGAGAAAGGAGAAAGGATGTGACtGTTTTCCATTGTATCTCAGTGCTGCAGTGTCTGGATATTCAGGTTCGAGAGACTCAAGCTCTGATTCTGGCTCCCACCAGAGAGTTAGCAGGACAGATCCAGAAGGTGCTGCTGGCGTTGGGAGACTACATGAATGTTCAGTGTCACACCTGCATCGGAGGCACAAACGTGGGCGAAGACATCCGGAAGCTGGACTACGGTCAGCATGTAGTGGCTGGAACGCCTGGCCGAGTGTTCGATATGATCCGCAGGAGGAGTCTGAGGACTCGGGCCATTAAGATGCTGGTGTTGGATGAAGCGGACGAGATGCTGAACAAAGgttttaaGGAGCAGATCTATGACGTGTACAGATACCTGCCGCCGGCCACTCAGGTGTGTCTGATCAGCGCCACGCTGCCTCACGAGATCCTGGAGATGACCAACAAGTTCATGACCGACCCCATCCGCATCCTGGTCAAACGTGATGAGTTGACTCTGGAGGGCATCAAGCAGTTCTTCGTGGCTGTGGAGCGAGAGGAGTGGAAGTTCGACACTCTGTGTGACCTCTACGACACGCTGACCATCACACAGGCCGTCATCTTCTGCAACACCAAGCGCAAGGTGGACTGGCTGACGGAGAAGATGAGGGAGGCCAACTTCACCGTGTCCTCGATGCACGGAGACATGCCCCAGAAAGAGCGCGAGTCCATCATGAAGGAGTTCAGATCTGGAGCCAGTCGagtgctgatctccacagacgTTTGGGCCAGAGGTCTGGATGTTCCTCAGGTGTCTCTCATCATTAACTACGATCTTCCCAACAACAGAGAGCTGTACATCCACagGATTGGTCGATCGGGTCGTTACGGCAGGAAGGGTGTGGCCATCAACTTTGTGAAGAACGACGACATCCGTATCCTGCGTGATATTGAGCAGTACTACTCCACACAGATCGACGAGATGCCCATGAACGTGGCTGACCTGATCTGATCCGATCCGATCCCAGAACATTCAACAGCAGTTTTGCTTTCACCTGAGTTTTTATTTCCCGTttactgtgatatttttttttaatctcctgTCTTCACGTAGTCGAGCGCTCCGGAGCAGTATGTTGTTCTGAGCGGGCTTCATTTAGCTTTtgtaaataaagaacatttgtCTCTGA

Function

symbol description
eif4a3 Predicted to enable RNA helicase activity and mRNA binding activity. Predicted to be involved in regulation of alternative mRNA splicing, via spliceosome. Predicted to act upstream of or within RNA metabolic process; mRNA transport; and regulation of translation. Predicted to be located in nucleus. Predicted to be part of U2-type catalytic step 1 spliceosome and catalytic step 2 spliceosome. Predicted to be active in nucleolus. Human ortholog(s) of this gene implicated in intellectual disability. Orthologous to human EIF4A3 (eukaryotic translation initiation factor 4A3).

NR:

description
PREDICTED: eukaryotic initiation factor 4A-III isoform X1

GO:

id name namespace
GO:0000381 regulation of alternative mRNA splicing, via spliceosome biological_process
GO:0006417 regulation of translation biological_process
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0051028 mRNA transport biological_process
GO:0016607 nuclear speck cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K13025 EIF4A3, FAL1; ATP-dependent RNA helicase

RNA

RNA id representative length rna type GC content exon number start site end site
TU119513 False 357 TUCP 0.55 2 11528734 11529636
XM_043252731.1 True 1532 mRNA 0.52 12 11528719 11535114

Neighbor

gene id symbol gene type direction distance location
LOC122354143 pfklb,pfkl,LOC108444469 coding upstream 5061 11512333 ~ 11523658 (+)
orc2 orc2,LOC107702034,LOC107702742,LOC107564576,LOC107740071,LOC107564577 coding upstream 28797 11486516 ~ 11499922 (+)
ldb1b LOC107702035,LOC107564569,LOC107713246,LOC108444470,LOC107700700,LOC107567630 coding upstream 43237 11470319 ~ 11485482 (+)
cant1b cant1b,LOC107702024,LOC107700370,LOC107567625 coding upstream 94195 11424607 ~ 11434524 (+)
afmid afmid coding upstream 104505 11417605 ~ 11424214 (+)
opn6a LOC107740064,LOC107567633,LOC107702020 coding downstream 4564 11539678 ~ 11547713 (+)
map1lc3c map1lc3c,LOC107701141,LOC107702025 coding downstream 62676 11597790 ~ 11599698 (+)
tbce LOC107715672,LOC107661157,LOC107713241,LOC107574186,LOC107701315,LOC107740075,LOC107564754 coding downstream 170994 11706108 ~ 11715351 (+)
si:ch1073-365p7.2 NA coding downstream 247545 11782659 ~ 11794097 (+)
mfn1b mfn1b,LOC107661155,LOC107701405,LOC107706807,LOC107552408,LOC108443893,LOC108270971 coding downstream 260421 11795535 ~ 11811706 (+)
G80809 NA non-coding upstream 16825 11511474 ~ 11511894 (+)
G80808 NA non-coding upstream 19666 11508000 ~ 11509053 (+)
G80804 NA non-coding upstream 56418 11471971 ~ 11472301 (+)
G80668 NA non-coding upstream 76581 11449049 ~ 11452138 (+)
LOC122353945 NA non-coding upstream 81198 11443640 ~ 11447521 (+)
G80814 NA non-coding downstream 14501 11549615 ~ 11555713 (+)
G80819 NA non-coding downstream 21848 11556962 ~ 11559047 (+)
G80825 NA non-coding downstream 35988 11571102 ~ 11571431 (+)
G80860 NA non-coding downstream 147810 11682924 ~ 11683244 (+)
G80861 NA non-coding downstream 148346 11683460 ~ 11683944 (+)
rpl37a rpl37a,RPL37A,zgc:171772,LOC107564751,LOC107567628 other upstream 1677 11525023 ~ 11527042 (+)
LOC122354145 pfkl,pfklb,LOC107564579,LOC108444469 other upstream 20948 11505653 ~ 11507771 (+)
G80761 NA other upstream 302097 11222347 ~ 11226622 (+)
G80638 NA other upstream 866749 10641132 ~ 10661970 (+)
G80551 LOC107659525,LOC107581741,LOC107718227,LOC107685975,LOC107573079,LOC103355429 other upstream 1057532 10466622 ~ 10471187 (+)
LOC122354243 irf2bp2b,LOC107713243,LOC107564749,LOC107567632,LOC107683260,LOC107740065 other downstream 44912 11580026 ~ 11672957 (+)
tomm20b tomm20b,tomm20,LOC107740066,LOC107701232,LOC107661159,LOC107713233 other downstream 163210 11698324 ~ 11700214 (+)
LOC122353861 gpr137b,LOC107740081,LOC107558369,LOC107703026,LOC107713226,LOC105890320,LOC101884293 other downstream 217431 11752545 ~ 12870121 (+)
shroom2b LOC107661152,LOC107552394,LOC107740069,LOC107705119,LOC107558375,LOC107702184 other downstream 292764 11827878 ~ 11857319 (+)
LOC122353892 LOC107565225,LOC107684241,LOC107713230,LOC107702019,LOC107564758,LOC107753360,LOC107576527 other downstream 325545 11860659 ~ 11868523 (+)

Expression


Co-expression Network