G80814


Basic Information

Item Value
gene id G80814
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 11549615 ~ 11555713 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU119516
cttttattattgtattatattgatAAATGTCCAtctgaggggggaaaaaagagaataCAACGGGAAATCAAGAATAAAcagtaatatcaataataaaatatgtacaagaggagtatagcatttattaacacgATCTTTCCGAACTCACTCTATACAACCAAAGGGTTCAAAGTTCAGCGACAGCTCTATACAGGCGCGTCCCGTCATGACGTCATCGGCCGACCGTCCAATCAAATCGTGTCATCGTTCCCTTTAAATGCTCTGGTGTTTCCGGTAAGCACGTCAATCGCTCGGTGACCGAATAATCAAATCGCGTCGATCAATAGCGCTTCAGCATCTTCAGTAGCCGAGTCAGCTGTACAGTTCCCATCTCTGACCAGCAGGTGGCGCGAACTAAACTCTCCCGCACGACTAGTATCACAAACATCGGTTAATCTTCACGGTTAGCTTCGCAGGTTAATATACACTGTATTCTGGTTCATAAATAGATTGTTGATCAATACTTTAAAACTATACATATTGAGATTCTTTCTTATATATCTAAAATTAATACGCACCAAAATGAACGaaatcagaaaatatatttactggtACGAAAACACggacgcgcacgcacgcacgcacgcacgcacgcggtTCCCTAGCAACGTCCCAAACCTCTGCGCGCGAGCTTAGCGTCAAACGCGCTCCGGATTTAAAGGAACagaacccaaaaatgaaaaaagtaccGTTTATTCACCGTCATGTCGATCCAATCCCGTTTATTTGTCTTCATTAAATGCAATGGTAAAAAGAGAGTTTTCCACACCTTAAAATGGGTTTGTAGGATAGGCCgttttcacaacaaaaaaaatttatctcacaattcagataTAAACTGTATTCTGggattctgagaaaaaaatgctCAATTACTCTCAATTTAGACTTTTTTgcaattatgagtttatataaactcagaaaatataaactcaaaatcGCAGGTTTCCTTGCAGTCCTAAGTTAAgttttttgttgaaaatttactcgtaattcagttttttttatttccgccacggaacaaatgaaaaaaagtaactgCGATTTTTCATCATCACTCAATTCGGATTTAAACTCGCAAGTCTGAGTACAAAGTCAAAATTACGAGATACGAACAGAAATAAAGGCCACTGCGACTTTTTATCGTGCAGCTCCGCGAATTTCGAGTTCACGCCTTGCAGTTTAATTTTCGCAAATTCTGacatggaattaaaaaaaaaggtaactgtgactttttatctcacgaTTTTAGATCTCACGGTGCTAAAACTTTagattgtgagataaaaaaaaaattggcatttACCTTTTTCCGTTGCGAAAATAAAAAAGCGCGAtgttaaccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatcgcaataACATCTCGAACCCATAATTCTGCGAAAACGAAGTAATCGCGTCAGAAACCAGCTTCTATAAGTTTGCagtgacatgaaggtgagtaaacgGTGACGGATTTCACGTTCGTCTAAACCAGTCCTTTATCATCATTTGGTAGAGTAGCAAACTCGCGTCACTTTTCACAGACCTGAAGGAAACGCACAAACCCTCCGCTCGTCTTGTAGTGCTCACGTCATCAGTTAAAGGCAAACGATTCCCGATAAAAGCAGAAAGTCTCTACCCTAGCAGTTAAAAACACGCAGACCcacacgcacgcacacacacacacgcacac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU119516 True 1757 lncRNA 0.39 2 11549615 11555713

Neighbor

gene id symbol gene type direction distance location
opn6a LOC107740064,LOC107567633,LOC107702020 coding upstream 1902 11539678 ~ 11547713 (+)
LOC122354143 pfklb,pfkl,LOC108444469 coding upstream 25957 11512333 ~ 11523658 (+)
orc2 orc2,LOC107702034,LOC107702742,LOC107564576,LOC107740071,LOC107564577 coding upstream 49693 11486516 ~ 11499922 (+)
ldb1b LOC107702035,LOC107564569,LOC107713246,LOC108444470,LOC107700700,LOC107567630 coding upstream 64133 11470319 ~ 11485482 (+)
cant1b cant1b,LOC107702024,LOC107700370,LOC107567625 coding upstream 115091 11424607 ~ 11434524 (+)
map1lc3c map1lc3c,LOC107701141,LOC107702025 coding downstream 42077 11597790 ~ 11599698 (+)
tbce LOC107715672,LOC107661157,LOC107713241,LOC107574186,LOC107701315,LOC107740075,LOC107564754 coding downstream 150395 11706108 ~ 11715351 (+)
si:ch1073-365p7.2 NA coding downstream 226946 11782659 ~ 11794097 (+)
mfn1b mfn1b,LOC107661155,LOC107701405,LOC107706807,LOC107552408,LOC108443893,LOC108270971 coding downstream 239822 11795535 ~ 11811706 (+)
clcn4 clcn4,LOC107552404,LOC107705120,LOC107558374,LOC108443897,LOC103025096 coding downstream 314712 11870425 ~ 11883430 (+)
G80809 NA non-coding upstream 37721 11511474 ~ 11511894 (+)
G80808 NA non-coding upstream 40562 11508000 ~ 11509053 (+)
G80804 NA non-coding upstream 77314 11471971 ~ 11472301 (+)
G80668 NA non-coding upstream 97477 11449049 ~ 11452138 (+)
LOC122353945 NA non-coding upstream 102094 11443640 ~ 11447521 (+)
G80819 NA non-coding downstream 1249 11556962 ~ 11559047 (+)
G80825 NA non-coding downstream 15389 11571102 ~ 11571431 (+)
G80860 NA non-coding downstream 127211 11682924 ~ 11683244 (+)
G80861 NA non-coding downstream 127747 11683460 ~ 11683944 (+)
G80865 NA non-coding downstream 134727 11690440 ~ 11694453 (+)
eif4a3 eif4a3,LOC107702040 other upstream 14501 11528719 ~ 11535114 (+)
rpl37a rpl37a,RPL37A,zgc:171772,LOC107564751,LOC107567628 other upstream 22573 11525023 ~ 11527042 (+)
LOC122354145 pfkl,pfklb,LOC107564579,LOC108444469 other upstream 41844 11505653 ~ 11507771 (+)
G80761 NA other upstream 322993 11222347 ~ 11226622 (+)
G80638 NA other upstream 887645 10641132 ~ 10661970 (+)
LOC122354243 irf2bp2b,LOC107713243,LOC107564749,LOC107567632,LOC107683260,LOC107740065 other downstream 24313 11580026 ~ 11672957 (+)
tomm20b tomm20b,tomm20,LOC107740066,LOC107701232,LOC107661159,LOC107713233 other downstream 142611 11698324 ~ 11700214 (+)
LOC122353861 gpr137b,LOC107740081,LOC107558369,LOC107703026,LOC107713226,LOC105890320,LOC101884293 other downstream 196832 11752545 ~ 12870121 (+)
shroom2b LOC107661152,LOC107552394,LOC107740069,LOC107705119,LOC107558375,LOC107702184 other downstream 272165 11827878 ~ 11857319 (+)
LOC122353892 LOC107565225,LOC107684241,LOC107713230,LOC107702019,LOC107564758,LOC107753360,LOC107576527 other downstream 304946 11860659 ~ 11868523 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G185014 NA non-coding NC_048566.1 CM023220.2 75435433 ~ 75435638 (-)
striped catfish (Pangasianodon hypophthalmus) G177271 NA non-coding NC_047605.1 CM018551.1 7294000 ~ 7344522 (+)
tiger barb (Puntius tetrazona) G142101 NA non-coding NC_056718.1 CM032087.1 26134018 ~ 26143317 (+)