LOC122353893 (LOC107558369,LOC107703026,LOC101884293)


Basic Information

Item Value
gene id LOC122353893
gene name LOC107558369,LOC107703026,LOC101884293
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 11761357 ~ 11764940 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU119563
GCGCAGGACCGGAGCGGCTCTTCCATTCCCAGCCACGTCTTCTCAAACCGCCCGTACTTCTTCGACAATCCCAGGCGCTACGACAGCGACGACGACCTGGCCTGGGCTTCTCACCCCGTGACCACCTCCACCAGTCTGTCGACGGACGGCTTTGATTGGAGCAGCCGAAGCAGCAGCTTCCTCGTCCATCTCGGAGGAGACGAGCCACGGTCGTCGGCGGCAACGGCGGGACTCAACCGCTGAAGACGTACGGCTCTGGACGCCAGAAACGCACTGCACTTTAAGCGCccacacacacgtcacacacacacacgtcacacacacGACGCACTGTAAGGGTgagttgccatggcaaccgaCTCCAGGTTCCCAGCGAGGCTGTGTTCAGATTGGAGCACTAACACACCGCATACTACCGAAAACAGTTACAGCAATATAAAGTAGCACATTATACCGCATGCTTCATCCAGAAACGCTCGCTCGGCGCCTTCAGGATCACTCTGGATCAAATTTAGACAATCTGATCAGAAAAAGATATTACGTGCATTTcattgtgggattttttttacgttatttttttatatttgcaattgcatttgtattttatttattatatttatttgcatttgtacgtttatttgcattcatttatttttattgatttgcactcttttttttatttgcatttattatccgtttctgaattgcatttttatttattttacttgcatttgttttaattgcatagttagtttttaattattttatttttaatgcaccgTAGAACTAATCGGCGCTTAATTCATCGAGAGGCATCTAGTGTTAGAACACATTCTGATCACAGACTCGTGatgttcatattcatattgTGATTCCAACACAGTAGTTACAGTTTGATTACGAAATAATGTGCAAGGCATGAATTTGTGTTACTTTTGAGTATCTATCTTTATCTGTTAAAAGCAGTATAACTGGTCCACTAAGATTGAAGCACACTTCTTTAACGTCTTTAAacatatttaggaaaaa
>TU119564
ATTGTTTACAGGAAACTGGCATGTTTATAGCATGATTATCGTGTTACTAACATGTCGCTTGCATGATTatcaagtgactagcatgttgctagcattattagcaagtgactagcatgtcgctagcacgattagcaagtgactagcatgtcgctagcatgtttagCATTGTTTACAGGTAACTGGCATGTTTATAGGATGATTATGTTACTAACATGTCGCTTGCATGATTatcaagtgactagcatgtcgctagcattattagcaAGTgattagcatgtcgctaacatgcaGAATGACCAAAACTCAACTTCACACACCTTTTGTGTTAGATGAAGAAGTTGAAATATATGTGAAGAAGCACACGGTTTAATGTTTGGAGACGGTGGTGATCTGACCGTTCTTTCTGTTTCTAGAGCGGCTCTTCCATTCCCAGCCACGTCTTCTCAAACCGCCCGTACTTCTTCGACAATCCCAGGCGCTACGACAGCGACGACGACCTGGCCTGGGCTTCTCACCCCGTGACCACCTCCACCAGTCTGTCGACGGACGGCTTTGATTGGAGCAGCCGAAGCAGCAGCTTCCTCGTCCATCTCGGAGGAGACGAGCCACGGTCGTCGGCGGCAACGGCGGGACTCAACCGCTGAAGACGTACGGCTCTGGACGCCAGAAACGCACTGCACTTTAAGCGCccacacacacgtcacacacacacacgtcacacacacGACGCACTGTAAGGGTgagttgccatggcaaccgaCTCCAGGTTCCCAGCGAGGCTGTGTTCAGATTGGAGCACTAACACACCGCATACTACCGAAAACAGTTACAGCAATATAAAGTAGCACATTATACCGCATGCTTCATCCAGAAACGCTCGCTCGGCGCCTTCAGGATCACTCTGGATCAAATTTAGACAATCTGATCAGAAAAAGATATTACGTGCATTTcattgtgggattttttttacgttatttttttatatttgcaattgcatttgtattttatttattatatttatttgcatttgtacgtttatttgcattcatttatttttattgatttgcactcttttttttatttgcatttattatccgtttctgaattgcatttttatttattttacttgcatttgttttaattgcatagttagtttttaattattttatttttaatgcaccgTAGAACTAATCGGCGCTTAATTCATCGAGAGGCATCTAGTGTTAGAACACATTCTGATCACAGACTCGTGatgttcatattcatattgTGATTCCAACACAGTAGTTACAGTTTGATTACGAAATAATGTGCAAGGCATGAATTTGTGTTACTTTTGAGTATCTATCTTTATCTGTTAAAAGCAGTATAACTGGTCCACTAAGATTGAAGCACACTTCTTTAACGTCTTTAAacatatttaggaaaaa
>XR_006252064.1
tagcatgtcgctaacatgcaGAATGACCAAAACTCAACTTCACACACCTTTTGTGTTAGATGAAGAAGTTGAAATATATGTGAAGAAGCACACGGTTTAATGTTTGGAGACGGTGGTGATCTGACCGTTCTTTCTGTTTCTAGAGCGGCTCTTCCATTCCCAGCCACGTCTTCTCAAACCGCCCGTACTTCTTCGACAATCCCAGGCGCTACGACAGCGACGACGACCTGGCCTGGGCTTCTCACCCCGTGACCACCTCCACCAGTCTGTCGACGGACGGCTTTGATTGGAGCAGCCGAAGCAGCAGCTTCCTCGTCCATCTCGGAGGAGACGAGCCACGGTCGTCGGCGGCAACGGCGGGACTCAACCGCTGAAGACGTACGGCTCTGGACGCCAGAAACGCACTGCACTTTAAGCGCccacacacacgtcacacacacacacgtcacacacacGACGCACTGTAAGGGTgagttgccatggcaaccgaCTCCAGGTTCCCAGCGAGGCTGTGTTCAGATTGGAGCACTAACACACCGCATACTACCGAAAACAGTTACAGCAATATAAAGTAGCACATTATACCGCATGCTTCATCCAGAAACGCTCGCTCGGCGCCTTCAGGATCACTCTGGATCAAATTTAGACAATCTGATCAGAAAAAGATATTACGTGCATTTcattgtgggattttttttacgttatttttttatatttgcaattgcatttgtattttatttattatatttatttgcatttgtacgtttatttgcattcatttatttttattgatttgcactcttttttttatttgcatttattatccgtttctgaattgcatttttatttattttacttgcatttgttttaattgcatagttagtttttaattattttatttttaatgcaccgTAGAACTAATCGGCGCTTAATTCATCGAGAGGCATCTAGTGTTAGAACACATTCTGATCACAGACTCGTGatgttcatattcatattgTGATTCCAACACAGTAGTTACAGTTTGATTACGAAATAATGTGCAAGGCATGAATTTGTGTTACTTTTGAGTATCTATCTTTATCTGTTAAAAGCAGTATAACTGGTCCACTAAGATTGAAGCACACTT

Function

NR:

description
PREDICTED: integral membrane protein GPR137B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU119563 False 1029 lncRNA 0.43 3 11761357 11764940
TU119564 True 1430 lncRNA 0.41 5 11761639 11764940
XR_006252064.1 False 1129 lncRNA 0.42 2 11762873 11764909

Neighbor

gene id symbol gene type direction distance location
tbce LOC107715672,LOC107661157,LOC107713241,LOC107574186,LOC107701315,LOC107740075,LOC107564754 coding upstream 46006 11706108 ~ 11715351 (+)
map1lc3c map1lc3c,LOC107701141,LOC107702025 coding upstream 161659 11597790 ~ 11599698 (+)
opn6a LOC107740064,LOC107567633,LOC107702020 coding upstream 213644 11539678 ~ 11547713 (+)
LOC122354143 pfklb,pfkl,LOC108444469 coding upstream 237699 11512333 ~ 11523658 (+)
orc2 orc2,LOC107702034,LOC107702742,LOC107564576,LOC107740071,LOC107564577 coding upstream 261435 11486516 ~ 11499922 (+)
si:ch1073-365p7.2 NA coding downstream 17719 11782659 ~ 11794097 (+)
mfn1b mfn1b,LOC107661155,LOC107701405,LOC107706807,LOC107552408,LOC108443893,LOC108270971 coding downstream 30595 11795535 ~ 11811706 (+)
clcn4 clcn4,LOC107552404,LOC107705120,LOC107558374,LOC108443897,LOC103025096 coding downstream 105485 11870425 ~ 11883430 (+)
LOC122353838 LOC108444238,LOC108271228 coding downstream 128408 11893348 ~ 11955071 (+)
LOC122353874 ralbb,ralba,LOC107558370,LOC107657963,LOC107713003,LOC107552396,LOC107741991,LOC107597482,LOC107746258 coding downstream 397138 12162078 ~ 12166342 (+)
G80865 NA non-coding upstream 66904 11690440 ~ 11694453 (+)
G80861 NA non-coding upstream 77413 11683460 ~ 11683944 (+)
G80860 NA non-coding upstream 78113 11682924 ~ 11683244 (+)
G80825 NA non-coding upstream 189926 11571102 ~ 11571431 (+)
G80819 NA non-coding upstream 202310 11556962 ~ 11559047 (+)
G80887 NA non-coding downstream 8678 11773618 ~ 11814731 (+)
G80889 NA non-coding downstream 9786 11774726 ~ 11775122 (+)
G81234 NA non-coding downstream 470252 12235192 ~ 12236177 (+)
G81236 NA non-coding downstream 472878 12237818 ~ 12238356 (+)
G81238 NA non-coding downstream 473530 12238470 ~ 12239245 (+)
tomm20b tomm20b,tomm20,LOC107740066,LOC107701232,LOC107661159,LOC107713233 other upstream 61143 11698324 ~ 11700214 (+)
LOC122354243 irf2bp2b,LOC107713243,LOC107564749,LOC107567632,LOC107683260,LOC107740065 other upstream 88400 11580026 ~ 11672957 (+)
eif4a3 eif4a3,LOC107702040 other upstream 226243 11528719 ~ 11535114 (+)
rpl37a rpl37a,RPL37A,zgc:171772,LOC107564751,LOC107567628 other upstream 234315 11525023 ~ 11527042 (+)
LOC122354145 pfkl,pfklb,LOC107564579,LOC108444469 other upstream 253586 11505653 ~ 11507771 (+)
shroom2b LOC107661152,LOC107552394,LOC107740069,LOC107705119,LOC107558375,LOC107702184 other downstream 62938 11827878 ~ 11857319 (+)
LOC122353892 LOC107565225,LOC107684241,LOC107713230,LOC107702019,LOC107564758,LOC107753360,LOC107576527 other downstream 95719 11860659 ~ 11868523 (+)
G81213 LOC107741992,LOC107680499,LOC107657964,LOC108442067,LOC108271057,LOC107574809 other downstream 427814 12192754 ~ 12225492 (+)
LOC122353844 LOC107747562,LOC107680562,LOC107597180,LOC107712997,LOC107657970,LOC107557419 other downstream 766386 12531326 ~ 12535426 (+)
G81268 NA other downstream 817975 12582915 ~ 12585641 (+)

Expression


Co-expression Network