G80847


Basic Information

Item Value
gene id G80847
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 11736372 ~ 11766054 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU119567
cacacacacagacacacacacacacacacacacacacacacacacacacacacacacacacacacacaggcacagacacacacacacacacacacacacacacacacacacacacacagacacacacacacacacacacacacacacacacacacacacacaccaatagCTGCTCATCATCTCAACTATTCCTCCAGAATTAgcagatcatgaaaaggcaGGAGAATGAATGCAGTGGATCTGAAACATCAGCCGTGGGTTTGAGCTAAATATAACAGAGATCAGACGCAGCTCCAGAGTTATTCTTAGAAACAGAGACGTCTTCAAAACCTGAACATCTGATATTTTAAGCCTGCACTGATAA
>TU119568
acacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagacacacacacacacacacacacaccaatagCTGCTCATCATCTCAACTATTCCTCCAGAATTAgcagatcatgaaaaggcaGGAGAATGAATGCAGTGGATCTGAAACATCAGCCGTGGGTTTGAGCTAAATATAACAGAGATCAGACGCAGCTCCAGAGTTATTCTTAGAAACAGAGACGTCTTCAAAACCTGAACATCTGATATTTTAAGCCTGCACTGATAA
>TU119569
cacacacacagacacacacacacacacacacacacacacacacacacacacacacacacacacacacaggcacagacacacacacacacacacacacacacacacacacacacacacagacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaccaatagCTGCTCATCATCTCAACTATTCCTCCAGAATTAgcagatcatgaaaaggcaGGAGAATGAATGCAGTGGATCTGAAACATCAGCCGTGGGTTTGAGCTAAATATAACAGAGATCAGACGCAGCTCCAGAGTTATTCTTAGAAACAGAGACGTCTTCAAAACCTGAACATCTGATATTTTAAGCCTGCACTGATAA

Function

GO:

id name namespace
GO:0009078 pyruvate family amino acid metabolic process biological_process
GO:0009080 pyruvate family amino acid catabolic process biological_process
GO:0042851 L-alanine metabolic process biological_process
GO:0042853 L-alanine catabolic process biological_process
GO:0006522 alanine metabolic process biological_process
GO:0006524 alanine catabolic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU119567 False 364 lncRNA 0.45 2 11736372 11766054
TU119568 False 297 lncRNA 0.44 2 11741614 11766054
TU119569 True 394 lncRNA 0.46 2 11736372 11766054

Neighbor

gene id symbol gene type direction distance location
tbce LOC107715672,LOC107661157,LOC107713241,LOC107574186,LOC107701315,LOC107740075,LOC107564754 coding upstream 21021 11706108 ~ 11715351 (+)
map1lc3c map1lc3c,LOC107701141,LOC107702025 coding upstream 136674 11597790 ~ 11599698 (+)
opn6a LOC107740064,LOC107567633,LOC107702020 coding upstream 188659 11539678 ~ 11547713 (+)
LOC122354143 pfklb,pfkl,LOC108444469 coding upstream 212714 11512333 ~ 11523658 (+)
orc2 orc2,LOC107702034,LOC107702742,LOC107564576,LOC107740071,LOC107564577 coding upstream 236450 11486516 ~ 11499922 (+)
si:ch1073-365p7.2 NA coding downstream 16605 11782659 ~ 11794097 (+)
mfn1b mfn1b,LOC107661155,LOC107701405,LOC107706807,LOC107552408,LOC108443893,LOC108270971 coding downstream 29481 11795535 ~ 11811706 (+)
clcn4 clcn4,LOC107552404,LOC107705120,LOC107558374,LOC108443897,LOC103025096 coding downstream 104371 11870425 ~ 11883430 (+)
LOC122353838 LOC108444238,LOC108271228 coding downstream 127294 11893348 ~ 11955071 (+)
LOC122353874 ralbb,ralba,LOC107558370,LOC107657963,LOC107713003,LOC107552396,LOC107741991,LOC107597482,LOC107746258 coding downstream 396024 12162078 ~ 12166342 (+)
G80865 NA non-coding upstream 41919 11690440 ~ 11694453 (+)
G80861 NA non-coding upstream 52428 11683460 ~ 11683944 (+)
G80860 NA non-coding upstream 53128 11682924 ~ 11683244 (+)
G80825 NA non-coding upstream 164941 11571102 ~ 11571431 (+)
G80819 NA non-coding upstream 177325 11556962 ~ 11559047 (+)
G80887 NA non-coding downstream 7564 11773618 ~ 11814731 (+)
G80889 NA non-coding downstream 8672 11774726 ~ 11775122 (+)
G81234 NA non-coding downstream 469138 12235192 ~ 12236177 (+)
G81236 NA non-coding downstream 471764 12237818 ~ 12238356 (+)
G81238 NA non-coding downstream 472416 12238470 ~ 12239245 (+)
tomm20b tomm20b,tomm20,LOC107740066,LOC107701232,LOC107661159,LOC107713233 other upstream 36158 11698324 ~ 11700214 (+)
LOC122354243 irf2bp2b,LOC107713243,LOC107564749,LOC107567632,LOC107683260,LOC107740065 other upstream 63415 11580026 ~ 11672957 (+)
eif4a3 eif4a3,LOC107702040 other upstream 201258 11528719 ~ 11535114 (+)
rpl37a rpl37a,RPL37A,zgc:171772,LOC107564751,LOC107567628 other upstream 209330 11525023 ~ 11527042 (+)
LOC122354145 pfkl,pfklb,LOC107564579,LOC108444469 other upstream 228601 11505653 ~ 11507771 (+)
shroom2b LOC107661152,LOC107552394,LOC107740069,LOC107705119,LOC107558375,LOC107702184 other downstream 61824 11827878 ~ 11857319 (+)
LOC122353892 LOC107565225,LOC107684241,LOC107713230,LOC107702019,LOC107564758,LOC107753360,LOC107576527 other downstream 94605 11860659 ~ 11868523 (+)
G81213 LOC107741992,LOC107680499,LOC107657964,LOC108442067,LOC108271057,LOC107574809 other downstream 426700 12192754 ~ 12225492 (+)
LOC122353844 LOC107747562,LOC107680562,LOC107597180,LOC107712997,LOC107657970,LOC107557419 other downstream 765272 12531326 ~ 12535426 (+)
G81268 NA other downstream 816861 12582915 ~ 12585641 (+)

Expression


Co-expression Network