tomm20b (tomm20b,tomm20,LOC107740066,LOC107701232,LOC107661159,LOC107713233)


Basic Information

Item Value
gene id tomm20b
gene name tomm20b,tomm20,LOC107740066,LOC107701232,LOC107661159,LOC107713233
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 11698324 ~ 11700214 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU119601
GCTCTCCGTGAGGGTCATGCAGTCAGTCTGATCGctggtgttattattattattattattatttctgggGCGTGATATCGTGTCGTGTCGTGCTGATCTCTCTCGTCATGATGggcggcagcagcagcaggatcGCGGCTGGTTTGGGAGCAGCGCTCTTCGTCggttactgcatttatttcgaCAGAAAGAGACGGAGTGACCCGAACTACAAGAACAAACTACGAGAACGAAGGAAAAAGCAGAAGGCTGCTCAGGAGAAAGCTGGATTATCGAAGTTACCAGACCTGAAAGACGCTGAAGCCGTTCAGAAGTTCTTCCTGGAGGAGATTCAGCTCGGAGAAGAGCTCCTGGCTCAGGgtgacTATGAGAAAGGCGTGGATCACCTGACGAATGCGATCGCTGTGTGTGGTCAGCCTCAGCAGCTCCTTCAGGTTCTTCAGCAAACCCTTCCTCCTCCGGTCTTCCAGATGCTCCTCACCAAACTCCCGTCCATCAGTCAGCGTATCGTCAGCGCTCAGAGTATCAGCGACGACGACATCGAGTAGAAGACCTCCAGCGGCGctgtgacatcacttcctgtctgccTCGAATCAGTCAGTCGCTCTGTCCCGCCCCTTTCCATCCTGGTTCTCGAACGCCGAACGCACAGATACGGATTTAAAGAAGCTTTTGGGACGAAATGTTTGTTTCGGTGTATTTGAATGACAAGCATGACCTTTTTTTCCGTCAGTTATTTGTTTTACTAACAAAGCATTTTGggtatacaaaaataataaaatatgcaagcAGCAAAATAAACGCGTCGCCGTAGAGGCTGGTAGACGGGCGACTAGAGCTGCTGTCATTTATCTGTGTTCATgtgtttaagttatttttaaaggctGTGAGATGTCTAACGTGGGATAGGAAGCACGTTTAAAGGTGCTCTGTTTCAAGTAGGGGAgagtttcctctttttttaaaactccaaaataaaaaaaaatcattgtatgGA
>XM_043252117.1
TGTCACGGGTTCTGACGTCACCGGGGTCCTTCCTCGTGCGGCTCTCCGTGAGGGTCATGCAGTCAGTCTGATCGctggtgttattattattattattattatttctgggGCGTGATATCGTGTCGTGTCGTGCTGATCTCTCTCGTCATGATGggcggcagcagcagcaggatcGCGGCTGGTTTGGGAGCAGCGCTCTTCGTCggttactgcatttatttcgaCAGAAAGAGACGGAGTGACCCGAACTACAAGAACAAACTACGAGAACGAAGGAAAAAGCAGAAGGCTGCTCAGGAGAAAGCTGGATTATCGAAGTTACCAGACCTGAAAGACGCTGAAGCCGTTCAGAAGTTCTTCCTGGAGGAGATTCAGCTCGGAGAAGAGCTCCTGGCTCAGGgtgacTATGAGAAAGGCGTGGATCACCTGACGAATGCGATCGCTGTGTGTGGTCAGCCTCAGCAGCTCCTTCAGGTTCTTCAGCAAACCCTTCCTCCTCCGGTCTTCCAGATGCTCCTCACCAAACTCCCGTCCATCAGTCAGCGTATCGTCAGCGCTCAGAGTATCAGCGACGACGACATCGAGTAGAAGACCTCCAGCGGCGctgtgacatcacttcctgtctgccTCGAATCAGTCAGTCGCTCTGTCCCGCCCCTTTCCATCCTGGTTCTCGAACGCCGAACGCACAGATACGGATTTAAAGAAGCTTTTGGGACGAAATGTTTGTTTCGGTGTATTTGAATGACAAGCATGACCTTTTTTTCCGTCAGTTATTTGTTTTACTAACAAAGCATTTTGggtatacaaaaataataaaatatgcaagcAGCAAAATAAACGCGTCGCCGTAGAGGCTGGTAGACGGGCGACTAGAGCTGCTGTCATTTATCTGTGTTCATgtgtttaagttatttttaaaggctGTGAGATGTCTAACGTGGGATAGGAAGCACGTTTAAAGGTGCTCTGTTTCAAGTAGGGGAgagtttcctctttttttaaaactccaaaataaaaaaaaatcattgtatgGA

Function

symbol description
tomm20b Predicted to enable mitochondrion targeting sequence binding activity. Predicted to contribute to protein transmembrane transporter activity. Predicted to be involved in protein import into mitochondrial matrix and tRNA import into mitochondrion. Predicted to act upstream of or within protein targeting. Predicted to be located in mitochondrial outer membrane. Predicted to be integral component of membrane. Predicted to be part of mitochondrial outer membrane translocase complex. Predicted to be integral component of mitochondrial outer membrane. Orthologous to human TOMM20 (translocase of outer mitochondrial membrane 20).
tomm20 Enables protein-transporting ATPase activity and unfolded protein binding activity. Involved in protein targeting to mitochondrion. Located in mitochondria-associated endoplasmic reticulum membrane and mitochondrial outer membrane.

NR:

description
PREDICTED: mitochondrial import receptor subunit TOM20 homolog

GO:

id name namespace
GO:0006605 protein targeting biological_process
GO:0005742 mitochondrial outer membrane translocase complex cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K17770 TOM20; mitochondrial import receptor subunit TOM20

RNA

RNA id representative length rna type GC content exon number start site end site
TU119601 False 997 TUCP 0.47 5 11698364 11700214
XM_043252117.1 True 1037 mRNA 0.48 5 11698324 11700214

Neighbor

gene id symbol gene type direction distance location
map1lc3c map1lc3c,LOC107701141,LOC107702025 coding upstream 98626 11597790 ~ 11599698 (+)
opn6a LOC107740064,LOC107567633,LOC107702020 coding upstream 150611 11539678 ~ 11547713 (+)
LOC122354143 pfklb,pfkl,LOC108444469 coding upstream 174666 11512333 ~ 11523658 (+)
orc2 orc2,LOC107702034,LOC107702742,LOC107564576,LOC107740071,LOC107564577 coding upstream 198402 11486516 ~ 11499922 (+)
ldb1b LOC107702035,LOC107564569,LOC107713246,LOC108444470,LOC107700700,LOC107567630 coding upstream 212842 11470319 ~ 11485482 (+)
tbce LOC107715672,LOC107661157,LOC107713241,LOC107574186,LOC107701315,LOC107740075,LOC107564754 coding downstream 5894 11706108 ~ 11715351 (+)
si:ch1073-365p7.2 NA coding downstream 82445 11782659 ~ 11794097 (+)
mfn1b mfn1b,LOC107661155,LOC107701405,LOC107706807,LOC107552408,LOC108443893,LOC108270971 coding downstream 95321 11795535 ~ 11811706 (+)
clcn4 clcn4,LOC107552404,LOC107705120,LOC107558374,LOC108443897,LOC103025096 coding downstream 170211 11870425 ~ 11883430 (+)
LOC122353838 LOC108444238,LOC108271228 coding downstream 193134 11893348 ~ 11955071 (+)
G80865 NA non-coding upstream 3871 11690440 ~ 11694453 (+)
G80861 NA non-coding upstream 14380 11683460 ~ 11683944 (+)
G80860 NA non-coding upstream 15080 11682924 ~ 11683244 (+)
G80825 NA non-coding upstream 126893 11571102 ~ 11571431 (+)
G80819 NA non-coding upstream 139277 11556962 ~ 11559047 (+)
G80847 NA non-coding downstream 36158 11736372 ~ 11766054 (+)
LOC122353893 LOC107558369,LOC107703026,LOC101884293 non-coding downstream 61143 11761357 ~ 11764940 (+)
G80887 NA non-coding downstream 73404 11773618 ~ 11814731 (+)
G80889 NA non-coding downstream 74512 11774726 ~ 11775122 (+)
G81234 NA non-coding downstream 534978 12235192 ~ 12236177 (+)
LOC122354243 irf2bp2b,LOC107713243,LOC107564749,LOC107567632,LOC107683260,LOC107740065 other upstream 25367 11580026 ~ 11672957 (+)
eif4a3 eif4a3,LOC107702040 other upstream 163210 11528719 ~ 11535114 (+)
rpl37a rpl37a,RPL37A,zgc:171772,LOC107564751,LOC107567628 other upstream 171282 11525023 ~ 11527042 (+)
LOC122354145 pfkl,pfklb,LOC107564579,LOC108444469 other upstream 190553 11505653 ~ 11507771 (+)
G80761 NA other upstream 471702 11222347 ~ 11226622 (+)
LOC122353861 gpr137b,LOC107740081,LOC107558369,LOC107703026,LOC107713226,LOC105890320,LOC101884293 other downstream 52331 11752545 ~ 12870121 (+)
shroom2b LOC107661152,LOC107552394,LOC107740069,LOC107705119,LOC107558375,LOC107702184 other downstream 127664 11827878 ~ 11857319 (+)
LOC122353892 LOC107565225,LOC107684241,LOC107713230,LOC107702019,LOC107564758,LOC107753360,LOC107576527 other downstream 160445 11860659 ~ 11868523 (+)
G81213 LOC107741992,LOC107680499,LOC107657964,LOC108442067,LOC108271057,LOC107574809 other downstream 492540 12192754 ~ 12225492 (+)
LOC122353844 LOC107747562,LOC107680562,LOC107597180,LOC107712997,LOC107657970,LOC107557419 other downstream 831112 12531326 ~ 12535426 (+)

Expression


Co-expression Network