G80887


Basic Information

Item Value
gene id G80887
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 11773618 ~ 11814731 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU119632
TTAACATACAAGAATAAAGACACAATGATGAGAAATATTAGATTTTACATACaagaaatgaagacaaaattacaacaaattttaattcattattcataaatgtgtacatacatgtgtaacataatatacatataatttaatattcttttaatataattttatctaggtttttatttttacattttttttttttttttttttttttttttttttttttttttTGTGGTTAAAAGTCTTTTTATTGGTTACAATATCAGTGTATGGCAGAATTATCACCAGGTTACTTTACAAATACGAAAAAGTtgagaaacaaaatgttattaaaaatgattatttgaaaatatggcACTGTGAAAGCACACAAGGCACCACACTCCTGGTTTTATCGgctcaaaagaaagaaaaagaaaagattatgAAGCTTACAAATTGAGCCGAAAGTATATTATGAATACTTAAAACATTGGGTTTCAACATGTACtgtaatactaaaatatgttcttttgttGCCAAGTTTGAGtggtctggaaaaaaaaataataaaaaataaaacacgtcATCCGAGGTTTTCATTAAAGACTACATCAGCATTTCAGCCGATCCAGAACCAAGCGCTCAAATCTTCAACATGATCAtaaaaaacaaccacaaaaagAATCACTGATTGGCAAATCTCTCAACCTCTACAGTACCAACACCAGAAATCTGACTTAAAACTAACCGATACTAATAATACCAGCATAATTCCTGTTTAAAAGTGAGACGTTATTACCAAAAGACATCCCTTTTCACAGTTAATCATCATAACATTCAGCAAAACTAAAATCAGTTCCTTTATGGAGCGGCGAAagggtttttcttttaattttatttatgctaACAAGCATCTTCACACTGAAAAAGGACTTcttacagaaaaaagaaaatgacttcAAGCTGCTTTCCGATTCCCTTTTATACAAAAAGGCAAAGTAAAAGAgagattttaaatgcttttcacagTTACATGACGTGTTAAAAGCGTTAACAAATGGCACAAATATTACCGTTTTAAGGCGGTTACTGACAGGcatcaatctggcaacccgcCGCAAACACAGGCATATACTGTCAGAACCGATGGCACTTAAATATGGCGGAAATGAGTAAACGGCTTCATCGCTCTGGTCTACGTTTTTTGatccataataaaaaaatgcctaATATAGTGACTTTTTAGCGGTTGAACTATCCTCACCAGGTAGTGTTCTTAATGTCCACCTGTTTGCACACATTTACGTGCTGAAACTgaggttgttttaaaaaaagctaacagTCTCGGCATTCAAATGAATTAacaccaataaaaatatttatactgttCAAGACGATGCATTCGTGTAACACTGCGACGACTAAATTTAAGTGGAGGGTTTGCGGccattactaaattaaaaaataaaatagaaaatagaaaaaggcGAGTGTTATGAATTCGTTCGAAGCACAGATTTCTTCGTAAGCACCAAGAATAGGGATTTATACACTAGGGTTAGTCACACTGCGATCGCTAGTACTGAAGGCTGAAGATCGAGAGCAGGTCGATTATGGGTTTCATCATCGAAAGCCAAACGAGGCGTCAAAGCGCTTCGAAATTAAACATTCGATCTTCAAGGCTGCAGAAAAATTCAGTGCCTTCTTTCTGAACACACTCGAGCACCAATAAACAATGACTGATTTAGTGGCGTGAGGGGAAacgaagaaaaagaaagttcgGGTTTtcatctgcattaaaaaaaaataattaaaattaattaacgtGTTTTAGGCTTTTGTTTTCCAATGCacaaaaaagtccaaaaaaaaattccacaaaCGTTTTGTAATACAGACTGTTTGCAATAATCCATCTAGTTTAGCGTTGTTTTCTATgtacaacaaataaacaaaaacaaaaagtgaaagattaataaaaatgtcatgggCCAATGATCAactagaaaaatatatacatgaacactatgtatgtatatactatatggtatatacatacacataatgcTGTACATATATACCATATCTATAttcatatacatgtatatttacatattacacaATGACACTTTAATAATCTCTTATTATTCCTGTGGCTGGCAGAGACGATGGGCTTCTCCGCGGGATTCATCTACTTACTGAAAATCATGTGTAATAACTGGAATACAGAGGAGCTGCTGTGGAAAGACGTGGGAACTGGACCGAAGGAAACGAGAGCCGCAGATTTTAAAGTGACGCTCTCAGTTCCAGATCCGAAGGAAACTGTCCCATGATCCCGTGGCCACAGCCATTCCATCGTCAGGTACTCCTAAACAGCTCACTCGGTTGTCATGACCAGCCAAGAcacctg

Function

GO:

id name namespace
GO:0016503 pheromone receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU119632 True 2383 lncRNA 0.34 2 11773618 11814731

Neighbor

gene id symbol gene type direction distance location
tbce LOC107715672,LOC107661157,LOC107713241,LOC107574186,LOC107701315,LOC107740075,LOC107564754 coding upstream 58267 11706108 ~ 11715351 (+)
map1lc3c map1lc3c,LOC107701141,LOC107702025 coding upstream 173920 11597790 ~ 11599698 (+)
opn6a LOC107740064,LOC107567633,LOC107702020 coding upstream 225905 11539678 ~ 11547713 (+)
LOC122354143 pfklb,pfkl,LOC108444469 coding upstream 249960 11512333 ~ 11523658 (+)
orc2 orc2,LOC107702034,LOC107702742,LOC107564576,LOC107740071,LOC107564577 coding upstream 273696 11486516 ~ 11499922 (+)
clcn4 clcn4,LOC107552404,LOC107705120,LOC107558374,LOC108443897,LOC103025096 coding downstream 55694 11870425 ~ 11883430 (+)
LOC122353838 LOC108444238,LOC108271228 coding downstream 78617 11893348 ~ 11955071 (+)
LOC122353874 ralbb,ralba,LOC107558370,LOC107657963,LOC107713003,LOC107552396,LOC107741991,LOC107597482,LOC107746258 coding downstream 347347 12162078 ~ 12166342 (+)
acyp2 acyp2,LOC107712999,LOC107744585 coding downstream 532924 12347655 ~ 12364409 (+)
sptbn1 sptbn1,LOC108442064,LOC108270927 coding downstream 560382 12375113 ~ 12466443 (+)
G80847 NA non-coding upstream 7564 11736372 ~ 11766054 (+)
LOC122353893 LOC107558369,LOC107703026,LOC101884293 non-coding upstream 8678 11761357 ~ 11764940 (+)
G80865 NA non-coding upstream 79165 11690440 ~ 11694453 (+)
G80861 NA non-coding upstream 89674 11683460 ~ 11683944 (+)
G80860 NA non-coding upstream 90374 11682924 ~ 11683244 (+)
G81234 NA non-coding downstream 420461 12235192 ~ 12236177 (+)
G81236 NA non-coding downstream 423087 12237818 ~ 12238356 (+)
G81238 NA non-coding downstream 423739 12238470 ~ 12239245 (+)
G81240 NA non-coding downstream 424800 12239531 ~ 12239751 (+)
G81241 NA non-coding downstream 425402 12240133 ~ 12240391 (+)
tomm20b tomm20b,tomm20,LOC107740066,LOC107701232,LOC107661159,LOC107713233 other upstream 73404 11698324 ~ 11700214 (+)
LOC122354243 irf2bp2b,LOC107713243,LOC107564749,LOC107567632,LOC107683260,LOC107740065 other upstream 100661 11580026 ~ 11672957 (+)
eif4a3 eif4a3,LOC107702040 other upstream 238504 11528719 ~ 11535114 (+)
rpl37a rpl37a,RPL37A,zgc:171772,LOC107564751,LOC107567628 other upstream 246576 11525023 ~ 11527042 (+)
LOC122354145 pfkl,pfklb,LOC107564579,LOC108444469 other upstream 265847 11505653 ~ 11507771 (+)
shroom2b LOC107661152,LOC107552394,LOC107740069,LOC107705119,LOC107558375,LOC107702184 other downstream 13147 11827878 ~ 11857319 (+)
LOC122353892 LOC107565225,LOC107684241,LOC107713230,LOC107702019,LOC107564758,LOC107753360,LOC107576527 other downstream 45928 11860659 ~ 11868523 (+)
G81213 LOC107741992,LOC107680499,LOC107657964,LOC108442067,LOC108271057,LOC107574809 other downstream 378023 12192754 ~ 12225492 (+)
LOC122353844 LOC107747562,LOC107680562,LOC107597180,LOC107712997,LOC107657970,LOC107557419 other downstream 716595 12531326 ~ 12535426 (+)
G81268 NA other downstream 768184 12582915 ~ 12585641 (+)

Expression


Co-expression Network