strn (strn,LOC107702041,LOC107701064,LOC108430145,LOC107713228,LOC108271087)


Basic Information

Item Value
gene id strn
gene name strn,LOC107702041,LOC107701064,LOC108430145,LOC107713228,LOC108271087
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 11536500 ~ 11631687 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU119892
gtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgtgcgtgcgtgcgcgtccGTGTTTTCGTaccagtaaatatattttctgatttCGTTCATTTTGGTGCGTATTAATTTTAGATATATAAGAAAGAATCTCAATATGTATAGTTTTAAAGTATTGATCAACAATCTATTTATGAACCAGAATACAGTGTATATTAACCTGCGAAGCTAACCGTGAAGATTAACCGATGTTTGTGATACTAGTCGTGCGGGAGAGTTTAGTTCGCGCCACCTGCTGGTCAGAGATGGGAACTGTACAGCTGACTCGGCTACTGAAGATGCTGAAGCGCTATTGATCGACGCGATTTGATTATTCGGTCACCGAGCGATTGACGTGCTTACCGGAAACACCAGAGCATTTAAAGGGAACGATGACACGATTTGATTGGACGGTCGGCCGATGACGTCATGACGGGACGCGCCTGTATAGAGCTGTCGCTGAACTTTGAACCCTTTGGTTGTATAGAGTGAGTTCGGAAAGATcgtgttaataaatgctatactcctcttgtacatattttattattgatattactgTTTATTCTTGATTTCCCGTTGtattctcttttttcccccctcagaTGGACATTTatcaatataatacaataataaaagaatatgtTGTATTTCAaaaaaaaaaaaaaata
>TU119893
gtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgtgcgtgcgtgcgcgtccGTGTTTTCGTaccagtaaatatattttctgatttCGTTCATTTTGGTGCGTATTAATTTTAGATATATAAGAAAGAATCTCAATATGTATAGTTTTAAAGTATTGATCAACAATCTATTTATGAACCAGAATACAGTGTATATTAACCTGCGAAGCTAACCGTGAAGATTAACCGATGTTTGTGATACTAGTCGTGCGGGAGAGTTTAGTTCGCGCCACCTGCTGGTCAGAGATGGGAACTGTACAGCTGACTCGGCTACTGAAGATGCTGAAGCGCTATTGATCGACGCGATTTGATTATTCGGTCACCGAGCGATTGACGTGCTTACCGGAAACACCAGAGCATTTAAAGGGAACGATGACACGATTTGATTGGACGGTCGGCCGATGACGTCATGACGGGACGCGCCTGTATAGAGCTGTCGCTGAACTTTGAACCCTTTGGTTGTATAGAGTGAGTTCGGAAAGATcgtgttaataaatgctatactcctcttgtacatattttattattgatattactgTTTATTCTTGATTTCCCGTTGtattctcttttttcccccctcagaTGGACATTTatcaatataatacaataataaaagaatatgtTGTATTTCAaaaaaaaaaaaaaata
>XM_043251824.1
GGAAACGTCATGAagtgacagcagcagcagcagcagcagagcgCGGTGAGTCGAGCGCTCGCCCCGTTTCCCGTTCTCGGACGAAATTCAGCGTCCGTTCGGTCGATCAGACCTCCGATTCCCGGCCTAGCCATGGACGAGCAGGCGGGCCCCGGTGTGTtctttaacaacaacaacaactcggTTCTTCCCGGTGGAGCGAAAGCGCCTCAACCGGGcgacggcggcggcggcggagaAACGGCCCGCGCTCAGTACAGTATTCCGGGGATTTTACACTTTCTGCAGCACGAGTGGGCCCGGTTCGAGGTGGAACGGGCGCAGTGGGAGGTGGAACGGGCCGAACTGCAGGCTCAGATTGCGTTCCTGCAGGGCGAGAGGAAAGGCCAGGAGAACCTGAAGAAGGATCTGGTGAGACGGATAAAGATGCTGGAATATGCCCTGAAGCAGGAGCGGGCCAAATACCACAAGCTGAAGTACGGGACGGAGCTGAACCAGGAGACTGAAGCCCCCAGCTACGACTCAGaTGAGGGCAACGAGAACGAGGCTCTTCCTGAACCGCCAAACAGTCAACTGAGCTGGAAACAGGGACGCCAGCTGCTGAGACaGTACCTGCAGGAGGTGGGCTACACCGACACTATCCTGGATGTGAAGTCTCAGCGGGTCAAAGCGCTGCTCGGACTGGCCGGAGACAGCGGAGAGAGACCCGGAGACAAGAGGAGCGAGCCCATGGTGAACGGGACCGAGCCGTCCTCGCTGAAGGACAGCACCACCACCATGATCGGGAAAGCGGAGATGTCGGACTCGGCCACGGTGCTGGAAGCCTTCAAGTTCATCGAGAAAGCCGCCGCTGAGTTCAGTGACGAAGACGATGACGAGGACAGCGAGGGACAGAACAAGACCATCATGGACCTCACCACCATGGTGAGGAGGAAGGTGTCTCCGtctccctcctcttcctcggCTGACATGAGCGACGACTTGGACACGGAGGAGGTTCTGAAGGGCTTTGACTTTCTGGCTAACAGCGAGGACATGGAGGGCCCGTCTGAAGCGCTGTCCTCCGGAGAGAGAGCCGACTGGGAGAAGGAAGAGCAGAGCCCCTCAGAGTCCTGGGACGTGGATGAGGGCCTGATCTCTAAACTCAAGGAACAGTACAAGAAGGAGCGCAAGGGCAAGAAAGGGGTGAAGAGGCCGAACCGCTGTAAGCTGCAGGACATGCTGGCTAACCTGCGCGACGCCGAGGATCTGTCGTCCATCCAGCCTCCGGTGGCTCCTCCGGTCCGCCCCAGCCTGCCCCGACTCAACGAGCATCCTCTGGGACGCACCGATGAGGTCGAAGCCCTGACGTTCCCCCCGTCCTCGGGGAAGTCCTTCATCATGGGGACAGACGAGACGCTGGAGAGCGAGCTGGGTCTGGGAGAACTGGCCGGACTCACCGTGGCCAACGAGGCCGAGAACCTGTCCTACGACATCACTAATAATAAAGACGCCCTGCGGAAGACGTGGAACCCCAAGTTCACACTCAGAAACCACTTCGATTCGATCCGAGGTCTAGCGTTTCACCCCATCGAGCCGGTCCTGATCACTGCGTCTGAAGATCACACGCTCAAGATGTGGAACCTGCAGAAAACCGCCCCCACCAAGAAGTGTGCCGCTCTGGATGTGGAGCCCATCTACACCTTCAGGGCTCACAGGGGTCCGGTTCTGTGTGTGGTGATGAGCTCCAGCGGTGATCAGTGTTTTAGCGGCGGTCTGGACGGGACCATTCAGTGCTGGAACACACCGAACCCCAACATTGATCCGTACGACTCATACGagccGTCGGTGCTGCGGGGGGCTCTGTCTGGACACTCGGATGCGGTCTGGGGTTTGGTGTACAGCTCGGCTCATCACAGACTGCTGTCCTGCTCCGCTGACGGGACGGTGAGGCTCTGGAGCGCAGCAGACACCTCGCCAGCCATCGCCGTCTTCAACGAGGACAGAGAGCTGGGCGTGCCGTCGTCGGTGGATCTGGTGTGCAGCGACCCGGCTCACATGGTCACGGCCTTCACTAACGGCAGGATGGGCATCTTCAACATGGAGACCCGACAGCTGGTGCTGGAGCTCGAGTCGCTAGCCGCCGGAAAACCCGatGCGCCGTGTCAGATTAATAAGGTTCTCAGTCACCCGACGCTGCCCATCACCATCACAGCTCAGGAGGACCGACACATCCGATTCTACGACAATAACACAGGCAAGTTGATTCACTCTATGGTTGCTCACCTGGACGCTGTCACCAGTCTTGCGGTGGATCCTAACGGCCTCTATCTGATGTCTGGTAGTCACGACTGCTCGGTGCGTCTGTGGAACATGGAGAGCAAGACCTGCATCCAGGAGTTCACGGCCCACAGGAAGAAGTTCGACGAGTCCATCAACGACGTGGCGTTCCACCCCACCAAGTGCTACATCGGCAGCGCTGGAGCCGACGCCCTCGCCAAAGTCTTCGTATGACCTCCGACCTCCGACCAAGACGGCTTCCACGAACTGATGCGCGGCGAGGCCTGACCTCGCAGGGACCGCTCTGATGATCCGGGCAGGCCTGGGTGCTCGAGGGGAGGTCGACGAACACGGAGGAACGCCAGAGGAACCTCCAAACACCTCCTCCGTTCGCAGGAAGCTGGCTGCTTCCCAACACTCCTGCGGTTTTAGCTCtcctctctgttttttttcccgtcTTGTGTTCGCTCCTTTTTAACGATGTGCCTTTTGCTACGAACAGTCTCGAGAAACGCAGATTCTCTCCGAATTATTCCCTTTCGAATTATCCTATATACGAAAAGAGCGCGTTGAACTTAATGCTTCTTCTCTCGACGATGAATTCAAGTTgtacataatataacataaaaataactcaATTTCTACATGCTCGTGTCCAGATATAAATTCAGACACTTATTTCGCCTCAAAATCGAGAAAGTAAAGCCTGTTTTTAAGctgcttcctcttttttttccgtTGTGGCATAGCTTACCGAacgtcaaattaaaaaaaatagcgatTTTGTGGCGAAATACGTCCCGGGTGACGTTCTTGAGATTTAAGTCTTAAACGCTCCCGATCCGTTCGGCGTCTCGGTTTAGCGCTGCGTTAAATACTCAAGCTGTTACTTTGCGCGTAAACCCGAGTCGATCCGGTAAAAGCCGCCTGTTCTGAGAAATCGACTTTGTGACGTACCGACAAACGCGGAGACAAAAGTTTTTAGATTTAGAGCGGCCGCTGAATATTCGTCAACGTGATAATGCGATAAGTCTTATAATAGTTTGAATGTGTTGCAGTTTTTGACAAGCTGTACTCAAAAGTACAATGATTCGGAAGTCTATATTCGTCGGAGatctgttaatttattttttgcctctCTTGTTTTGCTTGTAATGCCAAACGCATTAGATTTTCGCTTCAGGAAGGGACGAGCGGCTGCGTTGCGTACGTAAACCCCTTCGGCCGGTTCCTCTGACGTCGGCGTCGCTCGCTCATCCTCACCTTCTCTACCTGCACAGGTGGTGGTTTGTGTATTAGCCGAAAATGATttgaaatctattttatatgtaatagtTTGAAGCGGatactagtgtttttttttatcatcgtGTGACTGGCGACCGAGGTTGCAAACAGGCCGTGACCCGAGTCTCCTGCAGGttgaggtttgtttgtttttttttatttgaaactctTCTGGTTTATTTGAATTCGTCTGTGATTACTTGAACTATCTGGGCGTGCGTGTGGGGTCTGCGTGTTTTTAACTGCTAGGGTAGAGACTTTCTGCTTTTATCGGGAATCGTTTGCCTTTAACTGATGACGTGAGCACTACAAGACGAGCGGAGGGTTTGTGCGTTTCCTTCAGGTCTGTGAAAAGTGACGCGAGTTTGCTACTCTACCAAATGATGATAAAGGACTGGTTTAGACGAACGTGAAATCCGTCACcgtttactcaccttcatgtcactGCAAACTTATAGAAGCTGGTTTCTGACGCGATTACTTCGTTTTCGCAGAATTATGGGTTCGAGATGTtattgcgattttttttttttttttttttttttttttttttttttttttttttttttggttaacaTCGCGCTTTTTTATTTTCGCAACGGAAAAAGGTaaatgccaattttttttttatctcacaatctAAAGTTTTAGCACCGTGAGATCTAAAAtcgtgagataaaaagtcacagttacctttttttttaattccatgtCAGAATTTGCGAAAATTAAACTGCAAGGCGTGAACTCGAAATTCGCGGAGCTGCACGATAAAAAGTCGCAGTGGCCTTTATTTCTGTTCGTATCTCGTAATTTTGACTTTGTACTCAGACTTGCGAGTTTAAATCCGAATTGAGTGATGATGAAAAATCGcagttactttttttcatttgttccgtggcggaaataaaaaaaactgaattacgagtaaattttcaacaaaaaacTTAACTTAGGACTGCAAGGAAACCTGCgattttgagtttatattttctgagtttatataaactcataattgcAAAAAAGTCTAAATTGAGAGTAATTGagcatttttttctcagaatccCAGAATACAGTTTAtatctgaattgtgagataaattttttttgttgtgaaaacGGCCTATCCTACAAACCCATTTTAAGGTGTGGAAAACTCTCTTTTTACCATTGCATTTAATGAAGACAAATAAACGGGATTGGATCGACATGACGGTGAATAAACggtacttttttcatttttgggttctGTTCCTTTAAATCCGGAGCGCGTTTGACGCTAAGCTCGCGCGCAGAGGTTTGGGACGTTGCTAGGGAaccgcgtgcgtgcgtgcgtgcgtgcgtgcgcgtccGTGTTTTCGTaccagtaaatatattttctgatttCGTTCATTTTGGTGCGTATTAATTTTAGATATATAAGAAAGAATCTCAATATGTATAGTTTTAAAGTATTGATCAACAATCTATTTATGAACCAGAATACAGTGTATATTAACCTGCGAAGCTAACCGTGAAGATTAACCGATGTTTGTGATACTAGTCGTGCGGGAGAGTTTAGTTCGCGCCACCTGCTGGTCAGAGATGGGAACTGTACAGCTGACTCGGCTACTGAAGATGCTGAAGCGCTATTGATCGACGCGATTTGATTATTCGGTCACCGAGCGATTGACGTGCTTACCGGAAACACCAGAGCATTTAAAGGGAACGATGACACGATTTGATTGGACGGTCGGCCGATGACGTCATGACGGGACGCGCCTGTATAGAGCTGTCGCTGAACTTTGAACCCTTTGGTTGTATAGAGTGAGTTCGGAAAGATcgtgttaataaatgctatactcctcttgtacatattttattattgatattactgTTTATTCTTGATTTCCCGTTGtattctcttttttcccccctcagaTGGACATTTatcaatataatacaataataaaagaatatgtTGTATTTCA

Function

symbol description
strn Predicted to enable armadillo repeat domain binding activity; calmodulin binding activity; and protein phosphatase 2A binding activity. Predicted to be located in membrane. Predicted to be active in dendrite. Orthologous to human STRN (striatin).

NR:

description
striatin-like isoform X2

GO: NA

KEGG:

id description
K17608 STRN1_3_4; striatin 1/3/4

RNA

RNA id representative length rna type GC content exon number start site end site
TU119892 False 690 lncRNA 0.40 3 11536500 11631515
TU119893 False 690 lncRNA 0.40 3 11536500 11631687
XM_043251824.1 True 5515 mRNA 0.50 19 11549599 11596374

Neighbor

gene id symbol gene type direction distance location
cfap410 cunh21orf2,LOC107713232,LOC107564578,LOC107713238 coding downstream 32055 11499911 ~ 11504445 (-)
LOC122353939 si:dkey-93h22.8,LOC107701852,LOC107567634,LOC107713247 coding downstream 79880 11444822 ~ 11456620 (-)
ogal mgea5l,LOC107726775,LOC107567635,LOC107700507 coding downstream 92931 11434329 ~ 11443569 (-)
tk1 tk1,LOC107713239,LOC107726782,LOC107577227 coding downstream 119249 11405002 ~ 11417251 (-)
tmc6b tmc6,LOC107564572 coding downstream 162664 11353083 ~ 11373836 (-)
irf2bp2b irf2bp2b,LOC107713243,LOC107564749,LOC107567632,LOC107740065,LOC107683260 coding upstream 25291 11656978 ~ 11661044 (-)
rbm34 rbm34,LOC107661158 coding upstream 69475 11701162 ~ 11705953 (-)
LOC122353888 LOC107713227,LOC107661162,LOC107740077,LOC107564753,LOC107574184,LOC107558365 coding upstream 85575 11717262 ~ 11752522 (-)
gnb4b gnb4,LOC107701549,LOC107552407,LOC108270972 coding upstream 180883 11812570 ~ 11822791 (-)
LOC122353870 LOC107661166 coding upstream 224652 11856339 ~ 11859155 (-)
G81038 NA non-coding downstream 9448 11525058 ~ 11527052 (-)
G81037 pfkl,pfklb,LOC108423917,LOC108444469,LOC107564759 non-coding downstream 15698 11520131 ~ 11520802 (-)
G81036 pfkl,pfklb,LOC107564759,LOC108444469,LOC107739039 non-coding downstream 17053 11519051 ~ 11519447 (-)
G81034 NA non-coding downstream 24637 11511474 ~ 11511863 (-)
G81033 NA non-coding downstream 28731 11505660 ~ 11507769 (-)
G81059 NA non-coding upstream 5718 11637405 ~ 11648112 (-)
G81074 NA non-coding upstream 48891 11680578 ~ 11685006 (-)
G81075 NA non-coding upstream 51773 11683460 ~ 11683946 (-)
G81093 LOC107703026,LOC107740081,LOC107558369,LOC107713226 non-coding upstream 123937 11755624 ~ 11759407 (-)
G81097 NA non-coding upstream 152593 11784280 ~ 11786988 (-)
G80956 NA other downstream 117170 11403644 ~ 11419330 (-)
LOC122354635 NA other downstream 141624 11390592 ~ 11394876 (-)
mafgb mafgb,mafg,mafga,LOC107564557,LOC107702026,LOC107657334,LOC108437166,LOC106533856,LOC107739593,LOC103140971,LOC106920092,LOC107376449 other downstream 250282 11263332 ~ 11286218 (-)
si:ch73-100l22.3 NA other downstream 275206 11251255 ~ 11261294 (-)
srsf7b srsf7,LOC107665899,LOC107693014 other downstream 391430 11136170 ~ 11145070 (-)
ero1b ero1b other upstream 135144 11766831 ~ 11780809 (-)
G81192 NA other upstream 441909 12073596 ~ 12074075 (-)
G81318 NA other upstream 814173 12445860 ~ 12447287 (-)
hesx1 hesx1,LOC107712966,LOC107657957,LOC107557393,LOC107680467 other upstream 1032144 12663831 ~ 12667588 (-)
G81512 NA other upstream 1186066 12817753 ~ 13057881 (-)

Expression


Co-expression Network