G81213 (LOC107741992,LOC107680499,LOC107657964,LOC108442067,LOC108271057,LOC107574809)


Basic Information

Item Value
gene id G81213
gene name LOC107741992,LOC107680499,LOC107657964,LOC108442067,LOC108271057,LOC107574809
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 12192754 ~ 12225492 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU120138
CGCTTCACACAGCTGAATATATTAAGCCTCCAAATAACCGGTATTTATATTCCCGGGGCGTCCTCGTCCGTCCGCGCTTTCTCCTAAAGAAAACAAGCGCTGCCCGCACCCGCGTCCAACAAGCAGTTTGGGACAAATTAAAGCCCAGACAACTAGCGCGCGCGTTTTTATTCCGATGAGGATATTATTAAACGCGCTTCTAGAGCTCGTTTCTGCCGCGGTGGATTTGGAAGCGGATTTATTCTGTCACCGGAATAAAGGAATACAGCAGAGACGGCAAATCCGATCGGATTGACAGATTCTTTATCAGGATGCTGCAGTGATTTGAGGTGAAACATCTGGTCAAGATGATGTGGAGTTTGGAACCCGACCTGTACGAGTCAGGCCAACTGTTACAACAATACTTCCAAAGACTACTGCTACTCAGCCCGGATCCGCAGTACCGTGCTACAAGGCTTGCCCTTCGGAGGGGTTCCCACTGTCCTCGCTCTGGACTTTATGTGCTTCCTGGTTCTTCTTTTTGTCTTCTCCATCTTGCGGAAAGTGGCATGGGATTACGGCCGCCTGGCCCTGGTGACCCGATGCTGACAGtgtggCTTCTGCTCTTCATTCTGAAACACCGGACCGATATGAACGTCTCACCTCCGTCTCCAGCTCGGTGGATTTCGAACAGCGAGATAATGGCTTCTGCTCCTGGTTGTGGCTATATTCAGAATAAAGGACGAGGAGATCCGGGAGAAGTGTGGTGAAGATGCCGTTCATTACCTGTCCTTCCAGAGGCACATCATCGGTCTGCTGGTTGTGGTGGGAGTGCTGTCGGTGGGCATCGTTCTCCCGGTCAACTTCTCAGGCAACCTGCTGGaCAACAACGCATACAGCTTTGGCCGCACAACGATCGCCAACTTGAATTCTGGAAATAATCTTTTATGGCTTCACACGTCATTTGCCTTCATGTACCTGCTCCTCACCGTCTATAGCATGAGACGCCACACGTCCAAGATGCACTACAAAGAAGATGATCTGgtcAAACGCACTTTATTCATCAACGGCATCTCCAAATATGCAGAAGAAAGCCATATAAAACAGCACTTtgaACAGGCGTATGAGAACTGTGTGGTGCTGGAAGCGCGTGTTTGTTATAACGTGGCCAAGCTGATGTCCCTCAACGCTGAGAGGAAGAAGACTGAACGCAGTAAGAAGTTTTTCACGGATCTGATGGCTAAGGAGCACATGCCGGCTATGATCAACCCCAAGCCCTGCGGACATCTGTGCTGCTGCGCCATTACAGGCTGTGAAGAGGAGGAGGCTGTGAGTTATTACACCCAAACTGGAGTCCAAACTGAAGGAGGAGTAcaggaaggagaaggagaaagtCAACACCAAACCACTGGGCATGGCCTTCGTCACCTTCCAGA
>TU120139
ttctttcCTTCCCAAGACAGAAGAGAAGATTCAGCGGTCTGGAGGAGCGCGGGAGTAtgtggCTTCTGCTCTTCATTCTGAAACACCGGACCGATATGAACGTCTCACCTCCGTCTCCAGCTCGGTGGATTTCGAACAGCGAGATAATGGCTTCTGCTCCTGGTTGTGGCTATATTCAGAATAAAGGACGAGGAGATCCGGGAGAAGTGTGGTGAAGATGCCGTTCATTACCTGTCCTTCCAGAGGCACATCATCGGTCTGCTGGTTGTGGTGGGAGTGCTGTCGGTGGGCATCGTTCTCCCGGTCAACTTCTCAGGCAACCTGCTGGaCAACAACGCATACAGCTTTGGCCGCACAACGATCGCCAACTTGAATTCTGGAAATAATCTTTTATGGCTTCACACGTCATTTGCCTTCATGTACCTGCTCCTCACCGTCTATAGCATGAGACGCCACACGTCCAAGATGCACTACAAAGAAGATGATCTGgtcAAACGCACTTTATTCATCAACGGCATCTCCAAATATGCAGAAGAAAGCCATATAAAACAGCACTTtgaACAGGCGTATGAGAACTGTGTGGTGCTGGAAGCGCGTGTTTGTTATAACGTGGCCAAGCTGATGTCCCTCAACGCTGAGAGGAAGAAGACTGAACGCAGTAAGAAGTTTTTCACGGATCTGATGGCTAAGGAGCACATGCCGGCTATGATCAACCCCAAGCCCTGCGGACATCTGTGCTGCTGCGCCATTACAGGCTGTGAAGAGGAGGAGGCTGTGAGTTATTACACCCAAACTGGAGTCCAAACTGAAGGAGGAGTAcaggaaggagaaggagaaagtCAACACCAAACCACTGGGCATGGCCTTCGTCACCTTCCAGA
>TU120140
CAGATTCTTTATCAGGATGCTGCAGTGATTTGAGGTGAAACATCTGGTCAAGATGATGTGGAGTTTGGAACCCGACCTGTACGAGTCAGGCCAACTGTTACAACAATACTTCCAAAGACTACTGCTACTCAGCCCGGATCCGCAGTACCGTGCTACAAGGCTTGCCCTTCGGAGGGGTTCCCACTGTCCTCGCTCTGGACTTTATGTGCTTCCTGGTTCTTCTTTTTGTCTTCTCCATCTTGCGGAAAGTGGCATGGGATTACGGCCGCCTGGCCCTGGTGACCCGATGCTGACAGtgtggCTTCTGCTCTTCATTCTGAAACACCGGACCGATATGAACGTCTCACCTCCGTCTCCAGCTCGGTGGATTTCGAACAGCGAGATAATGGCTTCTGCTCCTGGTTGTGGCTATATTCAGAATAAAGGACGAGGAGATCCGGGAGAAGTGTGGTGAAGATGCCGTTCATTACCTGTCCTTCCAGAGGCACATCATCGGTCTGCTGGTTGTGGTGGGAGTGCTGTCGGTGGGCATCGTTCTCCCGGTCAACTTCTCAGGCAACCTGCTGGaCAACAACGCATACAGCTTTGGCCGCACAACGATCGCCAACTTGAATTCTGGAAATAATCTTTTATGGCTTCACACGTCATTTGCCTTCATGTACCTGCTCCTCACCGTCTATAGCATGAGACGCCACACGTCCAAGATGCACTACAAAGAAGATGATCTGgtcAAACGCACTTTATTCATCAACGGCATCTCCAAATATGCAGAAGAAAGCCATATAAAACAGCACTTtgaACAGGCGTATGAGAACTGTGTGGTGCTGGAAGCGCGTGTTTGTTATAACGTGGCCAAGCTGATGTCCCTCAACGCTGAGAGGAAGAAGACTGAACGCAGTAAGAAGTTTTTCACGGATCTGATGGCTAAGGAGCACATGCCGGCTATGATCAACCCCAAGCCCTGCGGACATCTGTGCTGCTGCGCCATTACAGGCTGTGAAGAGGAGGAGGCTGTGAGTTATTACACCCAAACTGGAGTCCAAACTGAAGGAGGAGTAcaggaaggagaaggagaaagtCAACACCAAACCACTGGGCATGGCCTTCGTCACCTTCCAGA
>TU120141
GgcaatgcatatttatattcatcagGTTGAATTGATTATAGAAACACACTTTCTGCACCAGAATCACATTTAAACATTCAACCATCTCCGCAGCATTGCACCCAATGCATCTACTTGTGTTCGAACCTACAACCTCAGATCATTAGCGGTTCGACATCCGTTTCCCCTCGGTCAGAAAACTCCCACACAGATGTCTGTCACAAACGCTCGACTCCCCTGCGCTTGCCTCAAATCAGCTTTTAGATGTCGCTGAAAGGATCCGTCCTGTTTTTAGTGCCGCGGATCTGTGTGGGCTGTTTAGATTTCCCATGGTTCCTGCCGAGGTGTCGGTGGCGCAGGTGAGCGCTGGGACGAGTGGGCTGATTCAGACGGAGGAGAGGAGCTGGACGCTCATCAAACGAGTGTCTAGTGTTCCATTGCGTCAGAACGATCTGCATTATATAACCGCACTCGATTCTTTATCAGGATGCTGCAGTGATTTGAGGTGAAACATCTGGTCAAGATGATGTGGAGTTTGGAACCCGACCTGTACGAGTCAGGCCAACTGTTACAACAATACTTCCAAAGACTACTGCTACTCAGCCCGGATCCGCAGTACCGTGCTACAAGGCTTGCCCTTCGGAGGGGTTCCCACTGTCCTCGCTCTGGACTTTATGTGCTTCCTGGTTCTTCTTTTTGTCTTCTCCATCTTGCGGAAAGTGGCATGGGATTACGGCCGCCTGGCCCTGGTGACCCGATGCTGACAGACAGAAGAGAAGATTCAGCGGTCTGGAGGAGCGCGGGAGTAtgtggCTTCTGCTCTTCATTCTGAAACACCGGACCGATATGAACGTCTCACCTCCGTCTCCAGCTCGGTGGATTTCGAACAGCGAGATAATGGCTTCTGCTCCTGGTTGTGGCTATATTCAGAATAAAGGACGAGGAGATCCGGGAGAAGTGTGGTGAAGATGCCGTTCATTACCTGTCCTTCCAGAGGCACATCATCGGTCTGCTGGTTGTGGTGGGAGTGCTGTCGGTGGGCATCGTTCTCCCGGTCAACTTCTCAGGCAACCTGCTGGaCAACAACGCATACAGCTTTGGCCGCACAACGATCGCCAACTTGAATTCTGGAAATAATCTTTTATGGCTTCACACGTCATTTGCCTTCATGTACCTGCTCCTCACCGTCTATAGCATGAGACGCCACACGTCCAAGATGCACTACAAAGAAGATGATCTGgtcAAACGCACTTTATTCATCAACGGCATCTCCAAATATGCAGAAGAAAGCCATATAAAACAGCACTTtgaACAGGCGTATGAGAACTGTGTGGTGCTGGAAGCGCGTGTTTGTTATAACGTGGCCAAGCTGATGTCCCTCAACGCTGAGAGGTACGCTTCTGCTGTTTAATGAATTGCTCTGGATGGGAAGCGCTTCTGTGTTTCAGTCTATCCCCTGATCTGACCTCGGAGATCTTCTATCGATCTGTTAAACGGGCTGAGGTTTCCTctgggggtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgtagGAAGAAGACTGAACGCAGTAAGAAGTTTTTCACGGATCTGATGGCTAAGGAGCACATGCCGGCTATGATCAACCCCAAGCCCTGCGGACATCTGTGCTGCTGCGCCATTACAGGCTGTGAAGAGGAGGAGGCTGTGAGTTATTACACCCAAACTGGAGTCCAAACTGAAGGAGGAGTAcaggaaggagaaggagaaagtCAACACCAAACCACTGGGCATGGCCTTCGTCACCTTCCAGA

Function

NR:

description
PREDICTED: CSC1-like protein 2 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU120138 False 1415 TUCP 0.50 12 12192754 12225492
TU120139 False 881 TUCP 0.50 10 12210952 12225492
TU120140 False 1120 TUCP 0.51 11 12206755 12225492
TU120141 True 1773 lncRNA 0.50 12 12205168 12225492

Neighbor

gene id symbol gene type direction distance location
LOC122353874 ralbb,ralba,LOC107558370,LOC107657963,LOC107713003,LOC107552396,LOC107741991,LOC107597482,LOC107746258 coding upstream 26412 12162078 ~ 12166342 (+)
LOC122353838 LOC108444238,LOC108271228 coding upstream 237683 11893348 ~ 11955071 (+)
clcn4 clcn4,LOC107552404,LOC107705120,LOC107558374,LOC108443897,LOC103025096 coding upstream 309324 11870425 ~ 11883430 (+)
mfn1b mfn1b,LOC107661155,LOC107701405,LOC107706807,LOC107552408,LOC108443893,LOC108270971 coding upstream 381048 11795535 ~ 11811706 (+)
si:ch1073-365p7.2 NA coding upstream 398657 11782659 ~ 11794097 (+)
acyp2 acyp2,LOC107712999,LOC107744585 coding downstream 122163 12347655 ~ 12364409 (+)
sptbn1 sptbn1,LOC108442064,LOC108270927 coding downstream 149621 12375113 ~ 12466443 (+)
eml6 eml6,LOC107597181,LOC107680471 coding downstream 247227 12472719 ~ 12523419 (+)
LOC122353873 NA coding downstream 375591 12601083 ~ 12602840 (+)
si:ch73-106k19.2 si:ch73-106k19.2,LOC107712967,LOC107557404,LOC107680468 coding downstream 384420 12609912 ~ 12612530 (+)
G80887 NA non-coding upstream 378023 11773618 ~ 11814731 (+)
G80889 NA non-coding upstream 417632 11774726 ~ 11775122 (+)
G80847 NA non-coding upstream 426700 11736372 ~ 11766054 (+)
LOC122353893 LOC107558369,LOC107703026,LOC101884293 non-coding upstream 427814 11761357 ~ 11764940 (+)
G80865 NA non-coding upstream 498301 11690440 ~ 11694453 (+)
G81234 NA non-coding downstream 9700 12235192 ~ 12236177 (+)
G81236 NA non-coding downstream 12326 12237818 ~ 12238356 (+)
G81238 NA non-coding downstream 12978 12238470 ~ 12239245 (+)
G81240 NA non-coding downstream 14039 12239531 ~ 12239751 (+)
G81241 NA non-coding downstream 14641 12240133 ~ 12240391 (+)
LOC122353892 LOC107565225,LOC107684241,LOC107713230,LOC107702019,LOC107564758,LOC107753360,LOC107576527 other upstream 324231 11860659 ~ 11868523 (+)
shroom2b LOC107661152,LOC107552394,LOC107740069,LOC107705119,LOC107558375,LOC107702184 other upstream 335435 11827878 ~ 11857319 (+)
tomm20b tomm20b,tomm20,LOC107740066,LOC107701232,LOC107661159,LOC107713233 other upstream 492540 11698324 ~ 11700214 (+)
LOC122354243 irf2bp2b,LOC107713243,LOC107564749,LOC107567632,LOC107683260,LOC107740065 other upstream 519797 11580026 ~ 11672957 (+)
eif4a3 eif4a3,LOC107702040 other upstream 657640 11528719 ~ 11535114 (+)
LOC122353844 LOC107747562,LOC107680562,LOC107597180,LOC107712997,LOC107657970,LOC107557419 other downstream 305834 12531326 ~ 12535426 (+)
G81268 NA other downstream 357423 12582915 ~ 12585641 (+)
G81364 rps23,rs23,LOC107680479,LOC106566095,LOC107578001 other downstream 444297 12669789 ~ 12700884 (+)
slmapa slmapa,slmap,LOC107680512,LOC107657974,LOC107557391 other downstream 542715 12768207 ~ 13057220 (+)
G81416 rala,LOC107694485,LOC107741991,LOC107552396,LOC107713003,LOC107657963,LOC105901921 other downstream 650021 12875513 ~ 12879313 (+)

Expression


Co-expression Network