LOC122353844 (LOC107747562,LOC107680562,LOC107597180,LOC107712997,LOC107657970,LOC107557419)


Basic Information

Item Value
gene id LOC122353844
gene name LOC107747562,LOC107680562,LOC107597180,LOC107712997,LOC107657970,LOC107557419
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 12531326 ~ 12535426 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU120211
GATTTTGCTATTTGCATTTGCCGCCCAACAtgcttttaatgtaatttatcttACGATGGTGCCCTCAGCAGTGTGTTGTGTCAAATTGTCAAACCTCTTTTATATGCCTGTCTCTGAAGCCCAATGCACTTCTCTACAGGAACATTGTTCTCCCCGTAGAAGGCAGTTTGGAAGGAGGGTATGAAAAATCAATGCTGCATTGATTCCTCAACTGTTTGTCAGTTATTAACAGGAGTTGTTGgacgttttgtgttttttgtaggATACTAGGCTGGTGTGCAATGTCCTAACGAGTTTCTTGGTTCCTCCAAACGGTTTGTTCAGATCTGTTTGTGACGACTTTTGCGCACTCCGCTCAAAAGCTTTCCTAAAAGCAGCTAAGGCTACATTTCTCTGATCTCATTTCTGTGTAAGCAAAGAATTCATGAACATTaaagtgctttattttcttattaat
>XM_043251729.1
CAGTCGCGCATCGGACAGCGAGCGAGAACCCAGCCGCTCACCGGCGCTCAGAATGCGGCTGCTACTGTGAACTCATCCCGCTCCCGTTCCCTGTGACGCCAACACTGAACGGGAAACATGTGGAACACTAAAAGAGGAACCTGCCTGCACAGCAAAGGAGAGTTATGGgGTTTGTTCATCCTCCTCTTGTACACCAGTCCCCTCTCCTGCTCGTCAAATTTCAGTCACCTCATCTATAAGATAAAAGAAGGATTACCTAAAGGGATACTCATAGGGGCTATCGGTGCAGACTTAAAATTGGATCTTTCTGTCAATCCTCCTCGCTCATTCAATCTGGAGCTAAAGACGGCCAGCCAGCAGTACGTGAATCTGAATAACACGACGGGGGAGCTGTTCACATCTGCCGTGGAGATCGACAGAGAGGCTCTGTGCGCGGAGTCCCACGAGGGCCAGGGCTGCGCAATCTTTCTGGACGTGCTGATCCTTCCCCAGCAGTACTTTCAGCTGGTTAAGGTTAAAATTGTTATCGAGGATGTGAACGACAACCGCCCGCATTTCCCTGTGGACGAAATTAGGGTGTCTGTGCCGGAGAACGCACCTGTTAATGCAAGGTTTGCGGTGGAGCAATCGGCGGTAGATCCCGACATCGGGATCCACAGCGTTCAAACATATTGGCTCGTTAATGACTATGGAGTTTTCACATTAGATGTAGAGGAGAACGAAGGAGGCGAACTGACGCCCTTTCTCATCATCACTGAGTCTCTCGATAGGGAGACGCAAGCTGAGTATGTTACTGACATTATAGCCGAGGACGGAGGATCTCCGCCGCTTCTAGGCACCGCCACTTTGAGGATTATAATCACGGATGTCAATGACAACTGCCCCAAGTTTACAGAGTCGCTAGTGAACGTTACACTTTACGGAAACGCTACTAAGGGCATGCAACTGGCTCGCCTGCAAGCCTACGATCCAGACGAGGGAGACAACGCTTTGATCACATACGCCTTCAGCGAACGGGTCACCCAGGAAAGCAGAAACCTGTTTCGTTTGGATAAAAACACTGGGGTCCTTAAACTAGCTGGAAACATTGACAACAACACCGGAAAACTTTACAAGCTAATCGTGCTCGCCAACGGGCCGACTTGTATTCCGGAAGTTGCGACAGTTACCGTCCACGTCATCAAACAGCTGTCCGGGCCCCCGGTGGTTATCCCACGTTACATTGCTTCAGAGAAGGACGGAGTTGTGAGTTTAAGCGAATCCGAGCCACCTTTTTCACCCATTgctttttttactattaaaaacacTGAGCCGCAACAGAAGATAGAGTGTCTTCTTGAAGGTGCAGGTCCGTTTAGGCTCGTACCGTACGAGAGGTTTAAAAACGAGTACCTGCTTGAGACCACAGAGCTTTTGGATTACGAGCAGCAACAGGATTATGAAATGGTTGTTGTGGTACATAACTCTCGAGGATTAGTAGTTAACACCGTAGTGAAAGTCCACGTGTTGGACGTTAACGACAACGCTCCGGTTTTCAAGCAGTCTTTCATTGACGTCACTGTGGAGGAGAACAACCCACCAAATACTTTCCTTGCTCAGCTTCAGGCCACCGATGCAGACAGCGAAAGTCGAGGCGAGGTGTATTACCTGCTCGGTGCCGACGCTCCCACCATTTTTGACTTGGATAGGTCAACTGGGGTCCTGACAGTGTCCACTTCTCTTGACCGAGAGGAAAAGGAGACGTATCGTTTCATGGTGCGAGCCGTGGACCGTGGCACGCCAAGAAAGGAGTCAATCGCCACGGTGATTATCAGCGTGCAGGATCGGAACGACAACAGCCCAAGGTTCATCAACAAGGACTTCACCTTCTTCGTACCTGAGAACTTTCCAGGTTTTGGGGAAATTGGCGTTCTTACCGTCACAGATGCTGATGCTGGGGAAAACGGCTGGGTGGCGTTATCAATCCTTAATGGGAGCGACATCTTCGTGATTGATACCGGACGAGGAGCGTTGCGAGCCAAGACCCCTCTGGACCGCGAGCAGCAGGGAACGTATTACGTTTGGATCGAGGCAATTGACGGAGGCGAACCTGCTCTTTCTTGCATCACAATGGTCACTGTTCTCCTGCTGGACGTCAACGACAACCCTCCAACTGTTCTCTTCCCTCAGTCCAACCAGTCGTACATGTTGGTGCTTCCCAGCACGCTTCCGGGTACGTCTATAACTGAGGTTTACGCGGTGGACCGGGACACGGGAATGAACGCTGTTATTGCGTACTGCATCATCAAGAGAACGGATGGAGAGCCGGGCTCGTTTGACATTGATCCCTACACGGGAAACATCACCCTGAGGAAAGCCTTGAGCAATCGAGGCCTCTACAGTTTGTGGGTCAAAGTCAGAGACCACGGTCAGCCAGAGCTCTACTCTACCGTGCTGGTCAACCTGTTCGTGAATGAGACCGTCAGCAACGAGACCCTCATTCAGAGTTTGTTGCCTAGAAGTGTAGATATCGACCACGGTGAGCTTCCTCCAGataaggaaggaaggaagggagAACAAGTGCCAAATCTGTGTGGCGagtataaagtgttactgcttGCTTTGACGACCACCTGCTTGGGATTGTTTCTGACCGTTGTGTCGTTGGTGACGTACATTTGCTGCAAGAGAAGAAAACCGAAAAAGAAGAGGTTAGACATTGAGATTCCTTTAAAACTCAACCACGAAATGGTGGACAAGAACCCAATGGAGATTTCAAACATCTGACACTGCTCGTACTGCCCAAATGAATCTGTTTACAGTGTGTTTTGTGCTTAATCTTAATAGCTCTCAAGTATAAGATTTGAAAATACGATGTATATATTGtgcatacagtatgttttataaCTATGGTGAAAtctacaaatataaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatagatcactGCAAAATATGAAGATTTTGCTATTTGCATTTGCCGCCCAACAtgcttttaatgtaatttatcttACGATGGTGCCCTCAGCAGTGTGTTGTGTCAAATTGTCAAACCTCTTTTATATGCCTGTCTCTGAAGCCCAATGCACTTCTCTACAGGAACATTGTTCTCCCCGTAGAAGGCAGTTTGGAAGGAGGGTATGAAAAATCAATGCTGCATTGATTCCTCAACTGTTTGTCAGTTATTAACAGGAGTTGTTGgacgttttgtgttttttgtaggATACTAGGCTGGTGTGCAATGTCCTAACGAGTTTCTTGGTTCCTCCAAACGGTTTGTTCAGATCTGTTTGTGACGACTTTTGCGCACTCCGCTCAAAAGCTTTCCTAAAAGCAGCTAAGGCTACATTTCTCTGATCTCATTTCTGTGTAAGCAAAGAATTCATGAACATTaaagtgctttattttctta

Function

NR:

description
PREDICTED: protocadherin-20-like

GO: NA

KEGG:

id description
K16498 PCDHD1; protocadherin delta 1

RNA

RNA id representative length rna type GC content exon number start site end site
TU120211 False 457 lncRNA 0.40 1 12534970 12535426
XM_043251729.1 True 3460 mRNA 0.47 2 12531326 12535421

Neighbor

gene id symbol gene type direction distance location
eml6 eml6,LOC107597181,LOC107680471 coding upstream 7907 12472719 ~ 12523419 (+)
sptbn1 sptbn1,LOC108442064,LOC108270927 coding upstream 64883 12375113 ~ 12466443 (+)
acyp2 acyp2,LOC107712999,LOC107744585 coding upstream 166917 12347655 ~ 12364409 (+)
LOC122353874 ralbb,ralba,LOC107558370,LOC107657963,LOC107713003,LOC107552396,LOC107741991,LOC107597482,LOC107746258 coding upstream 364984 12162078 ~ 12166342 (+)
LOC122353838 LOC108444238,LOC108271228 coding upstream 576255 11893348 ~ 11955071 (+)
LOC122353873 NA coding downstream 65657 12601083 ~ 12602840 (+)
si:ch73-106k19.2 si:ch73-106k19.2,LOC107712967,LOC107557404,LOC107680468 coding downstream 74486 12609912 ~ 12612530 (+)
atp6ap1la atp6ap1la,LOC107557415,LOC107597174,LOC107747526,LOC107657959,LOC107712951,LOC107680564 coding downstream 166881 12702307 ~ 12714931 (+)
pde12 pde12,LOC107682749,LOC107680466 coding downstream 180450 12715876 ~ 12719865 (+)
LOC122353879 arf4b,LOC107597172,LOC107747513,LOC107680530,LOC107557402,LOC107712993,LOC107657960 coding downstream 197328 12732754 ~ 12737640 (+)
G81255 NA non-coding upstream 7009 12523853 ~ 12524317 (+)
LOC122353894 LOC107657969 non-coding upstream 158715 12365659 ~ 12372611 (+)
G81241 NA non-coding upstream 290935 12240133 ~ 12240391 (+)
G81240 NA non-coding upstream 291575 12239531 ~ 12239751 (+)
G81238 NA non-coding upstream 292081 12238470 ~ 12239245 (+)
G81261 NA non-coding downstream 35897 12571323 ~ 12571790 (+)
G81266 LOC107712996,LOC107657949,LOC107557396 non-coding downstream 44481 12579907 ~ 12594103 (+)
G81254 NA non-coding downstream 77159 12612585 ~ 12613651 (+)
G81378 asb14,LOC107680484,LOC107579398 non-coding downstream 153721 12689147 ~ 12690998 (+)
G81393 LOC107557402 non-coding downstream 190368 12725794 ~ 12727235 (+)
G81213 LOC107741992,LOC107680499,LOC107657964,LOC108442067,LOC108271057,LOC107574809 other upstream 305834 12192754 ~ 12225492 (+)
LOC122353892 LOC107565225,LOC107684241,LOC107713230,LOC107702019,LOC107564758,LOC107753360,LOC107576527 other upstream 662803 11860659 ~ 11868523 (+)
shroom2b LOC107661152,LOC107552394,LOC107740069,LOC107705119,LOC107558375,LOC107702184 other upstream 674007 11827878 ~ 11857319 (+)
tomm20b tomm20b,tomm20,LOC107740066,LOC107701232,LOC107661159,LOC107713233 other upstream 831112 11698324 ~ 11700214 (+)
LOC122354243 irf2bp2b,LOC107713243,LOC107564749,LOC107567632,LOC107683260,LOC107740065 other upstream 858369 11580026 ~ 11672957 (+)
G81268 NA other downstream 47489 12582915 ~ 12585641 (+)
G81364 rps23,rs23,LOC107680479,LOC106566095,LOC107578001 other downstream 134363 12669789 ~ 12700884 (+)
slmapa slmapa,slmap,LOC107680512,LOC107657974,LOC107557391 other downstream 232781 12768207 ~ 13057220 (+)
G81416 rala,LOC107694485,LOC107741991,LOC107552396,LOC107713003,LOC107657963,LOC105901921 other downstream 340087 12875513 ~ 12879313 (+)
arid3a arid3a,LOC107685377,LOC107680546,LOC107553545,LOC107747603,LOC107597199 other downstream 629335 13164761 ~ 13210690 (+)

Expression


Co-expression Network