G81364 (rps23,rs23,LOC107680479,LOC106566095,LOC107578001)


Basic Information

Item Value
gene id G81364
gene name rps23,rs23,LOC107680479,LOC106566095,LOC107578001
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 12669789 ~ 12700884 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU120347
tatatttttttttttttttttttttttttttttttttttGTTTACGGAACTGGAAAAAAATTCCTTTTATTGTGATTTCGACAAGAACAGTTTATGACCTGGGTCTCTCCTTCTTGCCTTTGTACAGAGCCAGAAGAGAAACGTTGGCCACCTTCACCACCTTGAAACGAACGCCGGGAATGTCACCCACGGCGTGTCCCTTGCGACCGAATCCCGCCACCAGAACCTCGTCGTTCTCCTGCAACGCGGAGAGAAAAAGCACACGCTGAGAACTCGGCATCCTCAAACTCAGAGCAGCGCGCGAAAGTGAACGCCGTTTACCTCAATGAAGTTCAAGCAGCCGTCGTTGGGGACGAAAGCGGTGATCTTCTTGCCGTTCTTGATCAGCTGGACCCTCACGCACTTCCTGATGGCGGAGTTGGGCTGCTTGGCTTCAACACCTCTTTCTCAAGCACGATGCCTTTGGCGTGAGAAGCTCCACCGAAGGGGTTGGCCTTCAGAGCGGTGCCCAAGTGGGCTTTCTTATACTGTTTATCATGCCATTTCTGTACGCGGCGGTGGTTCCGCAGTTTTCTAGCAGTACGCAGTCCACGACACTTGcctgaaagaaaagg
>TU120348
CACATCACAAACTACTCAAATGCTTCATAAAGTTCATAAATTTACAgtcacagtcaaaaaaaaaaaaaaaaatccactcaAGCCTCGTCCAGGATGAAAACATTTAGCAGCACTCTGGACGGACCAGAAACCGAGTTTAAACCAATGTCAAGAAACACAAGGGACGGTTTACGGAACTGGAAAAAAATTCCTTTTATTGTGATTTCGACAAGAACAGTTTATGACCTGGGTCTCTCCTTCTTGCCTTTGTACAGAGCCAGAAGAGAAACGTTGGCCACCTTCACCACCTTGAAACGAACGCCGGGAATGTCACCCACGGCGTGTCCCTTGCGACCGAATCCCGCCACCAGAACCTCGTCGTTTGGGGACGAAAGCGGTGATCTTCTTGCCGTTCTTGATCAGCTGGACCCTCACGCACTTCCTGATGGCGGAGTTGGGCTGCTTGGCTTCAACACCACTTTCTCAAGCACGATGCCTTTGGCGTGAGAAGCTCCACCGAAGGGGTTGGCCTTCAGAGCGGTGCCCAAGTGGGCTTTCTTATACTGTTTATCATGCCATTTCTGTACGCGGCGGTGGTTCCGCAGTTTTCTAGCAGTACGCAGTCCACGACACTTGcctgaaagaaaagg
>TU120349
tatatattttttttttttttttttttttttttttttttatttatttttttTTTACGGAACTGGAAAAAAATTCCTTTTATTGTGATTTCGACAAGAACAGTTTATGACCTGGGTCTCTCCTTCTTGCCTTTGTACAGAGCCAGAAGAGAAACGTTGGCCACCTTCACCACCTTGAAACGAACGCCGGGAATGTCACCCACGGCGTGTCCCTTGCGACCGAATCCCGCCACCAGAACCTCGTCGTTGGGGACGAAAGCGGTGATCTTCTTGCCGTTCTTGATCAGCTGGACCCTCACGCACTTCCTGATGGCGGAGTTGGGCTGCTTGGCTTCAACACCTctgtaaaagcaaacaaaatcaGTCTCTCGTTTCTTTGGTTAACCTACCGATCAATCGGCGTCTTGATAAACGCGGCCTCTTACACTTTCTCAAGCACGATGCCTTTGGCGTGAGAAGCTCCACCGAAGGGGTTGGCCTTCAGAGCGGTGCCCAAGTGGGCTTTCTTATACTGTTTATCATGCCATTTCTGTACGCGGCGGTGGTTCCGCAGTTTTCTAGCAGTACGCAGTCCACGACACTTGcctgaaagaaaagg
>TU120350
tatatattttttttttttttttttttttttttttttttatttatttttttTTTACGGAACTGGAAAAAAATTCCTTTTATTGTGATTTCGACAAGAACAGTTTATGACCTGGGTCTCTCCTTCTTGCCTTTGTACAGAGCCAGAAGAGAAACGTTGGCCACCTTCACCACCTTGAAACGAACGCCGGGAATGTCACCCACGGCGTGTCCCTTGCGACCGAATCCCGCCACCAGAACCTCGTCGTTCTCCTGCTCAATGAAGTTCAAGCAGCCGTCGTTGGGGACGAAAGCGGTGATCTTCTTGCCGTTCTTGATCAGCTGGACCCTCACGCACTTCCTGATGGCGGAGTTGGGCTGCTTGGCTTCAACACCTctgtaaaagcaaacaaaatcaGTCTCTCGTTTCTTTGGTTAACCTACCGATCAATCGGCGTCTTGATAAACGCGGCCTCTTACACTTTCTCAAGCACGATGCCTTTGGCGTGAGAAGCTCCACCGAAGGGGTTGGCCTTCAGAGCGGTGCCCAAGTGGGCTTTCTTATACTGTTTATCATGCCATTTCTGTACGCGGCGGTGGTTCCGCAGTTTTCTAGCAGTACGCAGTCCACGACACTTGcctgaaagaaaagg
>TU120351
tatatattttttttttttttttttttttttttttttttatttatttttttTTTACGGAACTGGAAAAAAATTCCTTTTATTGTGATTTCGACAAGAACAGTTTATGACCTGGGTCTCTCCTTCTTGCCTTTGTACAGAGCCAGAAGAGAAACGTTGGCCACCTTCACCACCTTGAAACGAACGCCGGGAATGTCACCCACGGCGTGTCCCTTGCGACCGAATCCCGCCACCAGAACCTCGTCGTTCTCCTGCAACGCGGAGAGAAAAAGCACACGCTGAGAACTCGGCATCCTCAAACTCAGAGCAGCGCGCGAAAGTGAACGCCGTTTACCTCAATGAAGTTCAAGCAGCCGTCGTTGGGGACGAAAGCGGTGATCTTCTTGCCGTTCTTGATCAGCTGGACCCTCACGCACTTCCTGATGGCGGAGTTGGGCTGCTTGGCTTCAACACCTTCAAGCACGATGCCTTTGGCGTGAGAAGCTCCACCGAAGGGGTTGGCCTTCAGAGCGGTGCCCAAGTGGGCTTTCTTATACTGTTTATCATGCCATTTCTGTACGCGGCGGTGGTTCCGCAGTTTTCTAGCAGTACGCAGTCCACGACACTTGcctgaaagaaaagg
>TU120353
tatatattttttttttttttttttttttttttttttttatttatttttttTTTACGGAACTGGAAAAAAATTCCTTTTATTGTGATTTCGACAAGAACAGTTTATGACCTGGGTCTCTCCTTCTTGCCTTTGTACAGAGCCAGAAGAGAAACGTTGGCCACCTTCACCACCTTGAAACGAACGCCGGGAATGTCACCCACGGCGTGTCCCTTGCGACCGAATCCCGCCACCAGAACCTCGTCGTTCTCCTGCAACGCGGAGAGAAAAAGCACACGCTGAGAACTCGGCATCCTCAAACTCAGAGCAGCGCGCGAAAGTGAACGCCGTTTACCTCAATGAAGTTCAAGCACGATGCCTTTGGCGTGAGAAGCTCCACCGAAGGGGTTGGCCTTCAGAGCGGTGCCCAAGTGGGCTTTCTTATACTGTTTATCATGCCATTTCTGTACGCGGCGGTGGTTCCGCAGTTTTCTAGCAGTACGCAGTCCACGACACTTGcctgaaagaaaagg

Function

symbol description
rps23 Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be part of cytosolic small ribosomal subunit. Predicted to be active in ribosome. Orthologous to human RPS23 (ribosomal protein S23).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU120347 False 614 lncRNA 0.50 3 12694586 12700884
TU120348 True 629 TUCP 0.49 3 12700060 12700884
TU120349 False 595 lncRNA 0.47 3 12669789 12700884
TU120350 False 628 lncRNA 0.47 3 12669789 12700884
TU120351 False 619 lncRNA 0.49 3 12669789 12700884
TU120353 False 509 lncRNA 0.47 3 12669789 12700884

Neighbor

gene id symbol gene type direction distance location
si:ch73-106k19.2 si:ch73-106k19.2,LOC107712967,LOC107557404,LOC107680468 coding upstream 57259 12609912 ~ 12612530 (+)
LOC122353873 NA coding upstream 66949 12601083 ~ 12602840 (+)
eml6 eml6,LOC107597181,LOC107680471 coding upstream 146370 12472719 ~ 12523419 (+)
sptbn1 sptbn1,LOC108442064,LOC108270927 coding upstream 203346 12375113 ~ 12466443 (+)
acyp2 acyp2,LOC107712999,LOC107744585 coding upstream 305380 12347655 ~ 12364409 (+)
atp6ap1la atp6ap1la,LOC107557415,LOC107597174,LOC107747526,LOC107657959,LOC107712951,LOC107680564 coding downstream 1423 12702307 ~ 12714931 (+)
pde12 pde12,LOC107682749,LOC107680466 coding downstream 14992 12715876 ~ 12719865 (+)
LOC122353879 arf4b,LOC107597172,LOC107747513,LOC107680530,LOC107557402,LOC107712993,LOC107657960 coding downstream 31870 12732754 ~ 12737640 (+)
LOC122353835 flnb,LOC107680511,LOC107657976,LOC107712990 coding downstream 124046 12824930 ~ 13158870 (+)
LOC122353848 LOC107657964,LOC107741992,LOC107680499,LOC108442067,LOC108271057 coding downstream 226446 12927330 ~ 12955366 (+)
G81254 NA non-coding upstream 56138 12612585 ~ 12613651 (+)
G81266 LOC107712996,LOC107657949,LOC107557396 non-coding upstream 75686 12579907 ~ 12594103 (+)
G81261 NA non-coding upstream 97999 12571323 ~ 12571790 (+)
G81255 NA non-coding upstream 145472 12523853 ~ 12524317 (+)
LOC122353894 LOC107657969 non-coding upstream 297178 12365659 ~ 12372611 (+)
G81393 LOC107557402 non-coding downstream 24910 12725794 ~ 12727235 (+)
G81420 NA non-coding downstream 165095 12865979 ~ 12924171 (+)
G81421 NA non-coding downstream 186526 12887410 ~ 12889883 (+)
G81422 NA non-coding downstream 189082 12889966 ~ 12896107 (+)
G81424 LOC107680494,LOC107574810 non-coding downstream 264887 12965771 ~ 12976155 (+)
G81268 NA other upstream 84148 12582915 ~ 12585641 (+)
LOC122353844 LOC107747562,LOC107680562,LOC107597180,LOC107712997,LOC107657970,LOC107557419 other upstream 134363 12531326 ~ 12535426 (+)
G81213 LOC107741992,LOC107680499,LOC107657964,LOC108442067,LOC108271057,LOC107574809 other upstream 444297 12192754 ~ 12225492 (+)
LOC122353892 LOC107565225,LOC107684241,LOC107713230,LOC107702019,LOC107564758,LOC107753360,LOC107576527 other upstream 801266 11860659 ~ 11868523 (+)
shroom2b LOC107661152,LOC107552394,LOC107740069,LOC107705119,LOC107558375,LOC107702184 other upstream 812470 11827878 ~ 11857319 (+)
slmapa slmapa,slmap,LOC107680512,LOC107657974,LOC107557391 other downstream 67323 12768207 ~ 13057220 (+)
G81416 rala,LOC107694485,LOC107741991,LOC107552396,LOC107713003,LOC107657963,LOC105901921 other downstream 174629 12875513 ~ 12879313 (+)
arid3a arid3a,LOC107685377,LOC107680546,LOC107553545,LOC107747603,LOC107597199 other downstream 463877 13164761 ~ 13210690 (+)
G81434 NA other downstream 528059 13228943 ~ 13231092 (+)
LOC122354403 LOC107747219,LOC107747210,LOC107680505,LOC107757944,LOC107597155,LOC559131,LOC107580225,LOC107685131 other downstream 673137 13374021 ~ 13383843 (+)

Expression


Co-expression Network