hesx1 (hesx1,LOC107712966,LOC107657957,LOC107557393,LOC107680467)


Basic Information

Item Value
gene id hesx1
gene name hesx1,LOC107712966,LOC107657957,LOC107557393,LOC107680467
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 12663831 ~ 12667588 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU120378
AACGGTTTCAAgctaaatgataataatttcgAGTCACTGCTCGGTTCACCGAACCGATTCTCTGGAGCGATCCGTTCGAACGAACCGATTCATTCGAACTTCTCGCGCGCGAGCTGAACGATGGAGGTGATTTCCTaaagtaatgtgttttatttcaatcaGACGTGAACCCAGGGGGTCAGAACCGCGGCGTGGTCGCAGACAGCGGTGTTTCAGTGGACGTGAGGGTGAATGAAGAGGGTAAATCATACAGTAAATCACCGGGAGACGCTTACAGGAGAACACTGAACTGGTACATCGGGCGCAGGCCGCGGACGGCGTTCTCCAGCGTTCAGATCAAGATACTGGAGAGTGTGTTTCAAGTCAACTCGTACCCAGGCATCGACATCCGTGAAGAGCTTGCTAAGAAACTCCATCTAGATGAGGACAGGATCCAGATTTGGTTCCAGAACAGAAGAGCGAAGCTGAAGCGTTCACACAGAGAGTCTCAGTTCCTCATGGTGAAAAACGTCCTCAGTGATTTACAGGAACGCTgattttatcatattattattattattattattattattattattattattatttcagtcgCTCTGTGACGTTgtaatttattatgcatgtcTCGCACGCTTATGCAATTATTAATCTTTTACTCTGATTTAAACGCTGAAGACTGTTTGTTATTGTGTTTGCTGAAAATATgggaattaaaatgcaataaaccGTTTTAATCGAGGGTTTTTAATTCGGAGACTGTTTCCAAGTGAAGTTGAGCTAACGTTATCTTCTGCCAACTGTGTAATTAGTGCTTTGTAACTAGGGTTTAGTAAACCTATTAAGCATTGATCGGGTCACAAAGGAGGGTTTCTCTCAGGGGGGCATTTCAATAGAAGTGCATTTGCATTTGAGTCAGTCTTgggattttaac
>XM_043251772.1
tatataaatgtaaactaaattagtttttctataaaagcaaactaaaaataaatttaaacttaataaGGCCGTTTTTAAATGCCACCAAAAcctttttattctatttatttacttgttgtTAAGGTGTCAAGAAGTCACGTGTCtaataaacatttagttttcCAAGCACCTCCAACAAACTCCCTCAAATCCCGCCTAAACTGACTGCATTGTGAGTTGAGCGATTTGATATTCATTTCTAATTGGCCTTCTTTTGGTTTGCATTTAAACGGGTCTAATTGGTAATATCTTTGCAAAACAATGGACCCGCTGGGGGCCCGCGCTCGTGTCCCCGGAGCTCTCCCAGAGCCCAAGACAAATAAACAAGCGAGTCGTTTATTAAAAGCAGCCAGGCAACCCGAAAGAGATCAATTCGGCATTGAATGGGACAATTATTACATGCTGCTTCCGGCAAATTGCCCGGCTGCCATTGTGCTTTTGTGATCCCGAGCACCTTTCTCCATGCATGTCAACAGAGAATGGGAATATTCAGCAGGATTAGTTTAAAcggcattattattttaaacccGTGTGGTAGAAAACAAGGTAAATAAGATTAGGCGCTAGTTGACTGCTTTCTCATAATGCTGGAGATGCGGCACGAGGAAACGAGGAGGGGATAAATCCCAGGAACGGGGCCTAATTTTCTACCCGGTGAGTAAAAAGAATGGCTCGTCGGCCCTGTTTTGTCCCGTTCAATAGCAGGTTTAAGGGATTCGGTGTCTCTAGAAGATAACGGGTGCTGCTGCTTCGGGTCGGAAAGGCCTCGTTCGGACCCCGAATTACCTGCAGACCAGGGGCCCCATGCGGAGGGGCCGGCGATTCTCATGTAAAACGCTCGGCTTTGTTTGGTGACGTTTCGGAGCTATAAAGACCGGCCCCCGGCTTGCAGGTCACACCGGAAGAAGAGGACAGGGCTCTCCGGATGGCTTCCGTCAGCGTCGGCGCGCACCAGAGCCGCTCCGTGCCCGGACGGGCTGCTTTCAGCATCGACAGCATCCTGGGACTCGACCGGGCCGAGCAGAGAACCGTCCTGACGGCGCCGCACCGACCCTGGACAGACGTGAACCCAGGGGGTCAGAACCGCGGCGTGGTCGCAGACAGCGGTGTTTCAGTGGACGTGAGGGTGAATGAAGAGGGTAAATCATACAGTAAATCACCGGGAGACGCTTACAGGAGAACACTGAACTGGTACATCGGGCGCAGGCCGCGGACGGCGTTCTCCAGCGTTCAGATCAAGATACTGGAGAGTGTGTTTCAAGTCAACTCGTACCCAGGCATCGACATCCGTGAAGAGCTTGCTAAGAAACTCCATCTAGATGAGGACAGGATCCAGATTTGGTTCCAGAACAGAAGAGCGAAGCTGAAGCGTTCACACAGAGAGTCTCAGTTCCTCATGGTGAAAAACGTCCTCAGTGATTTACAGGAACGCTgattttatcatattattattattattattattattattattattattattatttcagtcgCTCTGTGACGTTgtaatttattatgcatgtcTCGCACGCTTATGCAATTATTAATCTTTTACTCTGATTTAAACGCTGAAGACTGTTTGTTATTGTGTTTGCTGAAAATATgggaattaaaatgcaataaaccGTTTTAATCGAGGGTTTTTAA

Function

symbol description
hesx1 Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within forebrain development. Predicted to be located in early endosome membrane; phagocytic vesicle; and ruffle. Predicted to be active in nucleus. Is expressed in anterior presumptive neural plate; neural keel; neural plate; and telencephalon. Human ortholog(s) of this gene implicated in septooptic dysplasia. Orthologous to human HESX1 (HESX homeobox 1).

NR:

description
homeobox protein ANF-1-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0030900 forebrain development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09354 HESX1; homeobox protein expressed in ES cells 1

RNA

RNA id representative length rna type GC content exon number start site end site
TU120378 False 931 lncRNA 0.43 3 12663831 12665964
XM_043251772.1 True 1686 mRNA 0.46 4 12664014 12667588

Neighbor

gene id symbol gene type direction distance location
il17rd il17rd,LOC107680557,LOC107597177,LOC107657971,LOC107557418 coding downstream 4147 12612824 ~ 12659684 (-)
zgc:194981 NA coding downstream 54099 12607236 ~ 12609732 (-)
LOC122353872 NA coding downstream 59128 12603666 ~ 12604703 (-)
tdrd3 tdrd3,LOC107712996,LOC107747549,LOC107680523,LOC107557396,LOC107597179 coding downstream 69044 12577019 ~ 12594787 (-)
foxg1b LOC107744583,LOC107680495,LOC107552399,LOC107657967,LOC107712998 coding downstream 316146 12345539 ~ 12347685 (-)
appl1 appl1,LOC107712995 coding upstream 3579 12671167 ~ 12684887 (-)
asb14a asb14,LOC107680484 coding upstream 17635 12685223 ~ 12695730 (-)
rps23 rps23,rs23,LOC107680479,LOC106566095 coding upstream 32639 12700227 ~ 12701654 (-)
arf4a arf4a,LOC108431611,LOC107680528,LOC107747489,LOC107597170,LOC108254969,LOC107599973 coding upstream 52328 12719916 ~ 12724608 (-)
LOC122353878 zgc:110286,LOC107597171,LOC107747504,LOC107712992,LOC107597172,LOC107557402,LOC107747513 coding upstream 58186 12725774 ~ 12728048 (-)
G81353 NA non-coding downstream 88718 12574863 ~ 12575113 (-)
G81350 NA non-coding downstream 95522 12568109 ~ 12568309 (-)
G81349 NA non-coding downstream 128405 12534950 ~ 12535426 (-)
G81327 NA non-coding downstream 140247 12483243 ~ 12523584 (-)
G81330 eml6,LOC107680471,LOC107597181,LOC107747670,LOC107712954 non-coding downstream 169890 12493104 ~ 12493941 (-)
LOC122353897 NA non-coding upstream 42818 12710406 ~ 12715974 (-)
G81514 NA non-coding upstream 200090 12867678 ~ 12870246 (-)
G81522 NA non-coding upstream 221340 12888928 ~ 12890216 (-)
G81524 NA non-coding upstream 226351 12893939 ~ 12895846 (-)
G81528 NA non-coding upstream 298208 12965796 ~ 12998617 (-)
G81318 NA other downstream 216544 12445860 ~ 12447287 (-)
G81192 NA other downstream 589756 12073596 ~ 12074075 (-)
ero1b ero1b other downstream 883022 11766831 ~ 11780809 (-)
strn strn,LOC107702041,LOC107701064,LOC108430145,LOC107713228,LOC108271087 other downstream 1032144 11536500 ~ 11631687 (-)
G80956 NA other downstream 1244501 11403644 ~ 11419330 (-)
G81512 NA other upstream 150165 12817753 ~ 13057881 (-)
G81523 NA other upstream 222693 12890281 ~ 12896130 (-)
LOC122353859 NA other upstream 289273 12956861 ~ 12965633 (-)
vipb LOC107557425,LOC107657966,LOC107680498,LOC107713001,LOC107741995,LOC107552401 other upstream 316785 12984373 ~ 12989957 (-)
ccl25b LOC107680477 other upstream 682348 13349936 ~ 13394008 (-)

Expression


Co-expression Network