G81393 (LOC107557402)


Basic Information

Item Value
gene id G81393
gene name LOC107557402
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 12725794 ~ 12727235 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU120397
tttttcagacaGACATCAGTTTGTTCTTTTATAAAGTCcgaacacaacacaacacacattaCAATGAGTCCAACTTTCACAAATTAACAGTGAATTAACAGTACATTGCATACAGCAGTGCGccagattaataaaataacaaaatcacaGCATTCAGTAAAGTGCGTAAGTCATAATTAAGGCACAAAATGAACATCAGAAccactaaaatgtttaaaaaatatcttgataGTGGAAAATTAACAATACAGAGGGAAATAAACTAGAATTCTGTATgctagatatataaatatatacaggaatatcaaaaataaacttGGAGACATAATATATAGAGTACATTCAAGTAGTTTGAGTGGTTTGGAGTGTTTTATCGTCTGGAGAGTTGATCGGAGAGCCAGTCCAGTCCTTCATATAAACCTGATCCTTGAACCGCACACGTGGCCTGAACGAaccactgTTCCTCTCAGTGCGTGTAAACCCAGTCTGTCCGTCAGCTCGTGGACCGGCATGGCTTTGGGTAAATCCTGCTTGTTAGCGAGAACCAACAGAAGCGCGTCTCTCATCTCGTCCTCCGCCAGCATCGCGTTCAGTTCCTCTGCTGCCGTTTCGATCCGGTCACGATCGCTGCTGTCCACCACGAAGATCAGGCCCTGGGTCACGAGA

Function

NR:

description
PREDICTED: ADP-ribosylation factor 4-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU120397 True 666 lncRNA 0.42 2 12725794 12727235

Neighbor

gene id symbol gene type direction distance location
pde12 pde12,LOC107682749,LOC107680466 coding upstream 5929 12715876 ~ 12719865 (+)
atp6ap1la atp6ap1la,LOC107557415,LOC107597174,LOC107747526,LOC107657959,LOC107712951,LOC107680564 coding upstream 10863 12702307 ~ 12714931 (+)
si:ch73-106k19.2 si:ch73-106k19.2,LOC107712967,LOC107557404,LOC107680468 coding upstream 113264 12609912 ~ 12612530 (+)
LOC122353873 NA coding upstream 122954 12601083 ~ 12602840 (+)
eml6 eml6,LOC107597181,LOC107680471 coding upstream 202375 12472719 ~ 12523419 (+)
LOC122353879 arf4b,LOC107597172,LOC107747513,LOC107680530,LOC107557402,LOC107712993,LOC107657960 coding downstream 5519 12732754 ~ 12737640 (+)
LOC122353835 flnb,LOC107680511,LOC107657976,LOC107712990 coding downstream 97695 12824930 ~ 13158870 (+)
LOC122353848 LOC107657964,LOC107741992,LOC107680499,LOC108442067,LOC108271057 coding downstream 200095 12927330 ~ 12955366 (+)
LOC122353891 slmapa,slmap,LOC107680512,LOC107657974,LOC107557391 coding downstream 307402 13034637 ~ 13055876 (+)
LOC122353677 LOC107747780 coding downstream 432907 13160142 ~ 13161913 (+)
G81378 asb14,LOC107680484,LOC107579398 non-coding upstream 34796 12689147 ~ 12690998 (+)
G81254 NA non-coding upstream 112143 12612585 ~ 12613651 (+)
G81266 LOC107712996,LOC107657949,LOC107557396 non-coding upstream 131691 12579907 ~ 12594103 (+)
G81261 NA non-coding upstream 154004 12571323 ~ 12571790 (+)
G81255 NA non-coding upstream 201477 12523853 ~ 12524317 (+)
G81420 NA non-coding downstream 138744 12865979 ~ 12924171 (+)
G81421 NA non-coding downstream 160175 12887410 ~ 12889883 (+)
G81422 NA non-coding downstream 162731 12889966 ~ 12896107 (+)
G81424 LOC107680494,LOC107574810 non-coding downstream 238536 12965771 ~ 12976155 (+)
LOC122353896 NA non-coding downstream 250354 12977589 ~ 13019135 (+)
G81364 rps23,rs23,LOC107680479,LOC106566095,LOC107578001 other upstream 24910 12669789 ~ 12700884 (+)
G81268 NA other upstream 140153 12582915 ~ 12585641 (+)
LOC122353844 LOC107747562,LOC107680562,LOC107597180,LOC107712997,LOC107657970,LOC107557419 other upstream 190368 12531326 ~ 12535426 (+)
G81213 LOC107741992,LOC107680499,LOC107657964,LOC108442067,LOC108271057,LOC107574809 other upstream 500302 12192754 ~ 12225492 (+)
LOC122353892 LOC107565225,LOC107684241,LOC107713230,LOC107702019,LOC107564758,LOC107753360,LOC107576527 other upstream 857271 11860659 ~ 11868523 (+)
slmapa slmapa,slmap,LOC107680512,LOC107657974,LOC107557391 other downstream 40972 12768207 ~ 13057220 (+)
G81416 rala,LOC107694485,LOC107741991,LOC107552396,LOC107713003,LOC107657963,LOC105901921 other downstream 148278 12875513 ~ 12879313 (+)
arid3a arid3a,LOC107685377,LOC107680546,LOC107553545,LOC107747603,LOC107597199 other downstream 437526 13164761 ~ 13210690 (+)
G81434 NA other downstream 501708 13228943 ~ 13231092 (+)
LOC122354403 LOC107747219,LOC107747210,LOC107680505,LOC107757944,LOC107597155,LOC559131,LOC107580225,LOC107685131 other downstream 646786 13374021 ~ 13383843 (+)

Expression


Co-expression Network