ranbp3a (LOC107597153,LOC107680549,LOC107757943,LOC107685118)


Basic Information

Item Value
gene id ranbp3a
gene name LOC107597153,LOC107680549,LOC107757943,LOC107685118
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 13402287 ~ 13410126 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU120552
CAGAGGTCAGCAGAAGGATCCAGCACGGAGGATGGAGAAGACTCTGATACGGCAGATGGAAATTACAGCCCTGCAGCCAAAAGAGGAAGAACGTCTTCGTTTACGCAATTTCCACCAACTCATTCCGTTTCTAAGAATAATGTTTTCATGCCATCCAATTTCTGCCAGTCACCAAACGAAAACTCTGACTCAGAACCTGaAGAGAAAACTGTGGGGTTTCGCCTGAAACCCCCGACTCTGATCCATGGCCAGGCTCCGAGCGCTGGTGTCCCCAGCCCGAAACCCAAAGAAGCCCAGCGCAGCATCCTGCGACCTCCAGTGCTGCAGCCCCCTCCGACTCGATCCCCCCCTCAGAACCACACGAGCAACAGCGTTCAAACGGAGCAAAGAACCTCTCCGACGGAGGAGTCGAATGTGAACGTCACTCCGAGGCTTCTGCTGCTTGCActcgtgatgatgatgatgatgatgatgatgatgatgatgatgtgt
>XM_043251639.1
ATGGCGGATGAGAACGAGCAGCGCTTCACTCCTTACTGCGTGACTCCAGTCCTGGCTCTAAAACACTGCTTCTGTCCTCAGAGGTCAGCAGAAGGATCCAGCACGGAGGATGGAGAAGACTCTGATACGGCAGATGGAAATTACAGCCCTGCAGCCAAAAGAGGAAGAACGTCTTCGTTTACGCAATTTCCACCAACTCATTCCGTTTCTAAGAATAATGTTTTCATGCCATCCAATTTCTGCCAGTCACCAAACGAAAACTCTGACTCAGAACCTGaAGAGAAAACTGTGGGGTTTCGCCTGAAACCCCCGACTCTGATCCATGGCCAGGCTCCGAGCGCTGGTGTCCCCAGCCCGAAACCCAAAGAAGCCCAGCGCAGCATCCTGCGACCTCCAGTGCTGCAGCCCCCTCCGACTCGATCCCCCCCTCAGAACCGTGAACACGAGCAACAGCGTTCAAACGGAGCAAAGAACCTCTCCGACGGAGGAGTCGAATGTGAACGTCACTCCGAGGCTTCTGCTGCTTGCActcgtgatgatgatgatgatgatgatgatgatgatgatgatCGGAAAAACTGAAGGCGCCCGATTGAGAGCAGTTTTGTGTTTGGGCAGAATATGAGGGGACAGAGCAAAGGTTCGGTGGAAAACAGCGGCGTCTCCTCCAAAAGTGGCGATTCAGAGGaaacaaattactttttgcAGTATATCACTTCTAGTGCGCAAAAACCTGACAGCAGCAATGCCAACAGCGTGAAGTTTGTCTTTGGGCAGAACATGTTGGATCGCGTCTTGGCAATGCCAAAATTCAGCACTGAACCTCCAGGGGGCAGCAAAGAGCCTCAGTCAGAGATGGGCCTGTTCGGCCAGATTTCCTCCTCGCATGATCAAACCGTGGAGAAGAGTATGTgttttttggAGTCCCTGGAGGAGTGCTGCGGCGCGCGACACGAAGCACACAAACCACAGAAGTGTTTATTAGAGCGAGTGGAGGTCAGGACGGGAGAAGAGTCTGAGAGCAATGTTCTGCAGATGCAGTGCaagctgtttgtgtttgagatGACGTCTCAGTCGGGGGTGGAGAGAGATGTGGAGTGCTCGCTCAATGACATGGCGTCCGCTGATGACGGCACCTTACAGTCCAGACTGGTCATGCGGACTCAGGGAAGTCTTCGAGTGATCCTCAACACCAAGCTTTGGCCTCAGATGCAAGTGGATAAAGCCAGTGAAAGAGTCTCAGAATAA

Function

GO:

id name namespace
GO:0046907 intracellular transport biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU120552 False 492 TUCP 0.53 6 13403272 13405924
XM_043251639.1 True 1248 mRNA 0.52 15 13402287 13410126

Neighbor

gene id symbol gene type direction distance location
ctns LOC107680482,LOC107747199,LOC107597154,LOC107757929,LOC107685310,LOC107553535 coding upstream 1685 13396218 ~ 13400602 (+)
slc1a6 slc1a6,LOC107747749,LOC107685347,LOC107757933,LOC107553532,LOC108437295 coding upstream 37263 13348175 ~ 13365024 (+)
tax1bp3 tax1bp3,LOC107685157,LOC107747253,LOC107680510 coding upstream 50955 13347122 ~ 13351332 (+)
nr2f6b nr2f6b,LOC107680506,LOC107747262 coding upstream 56088 13336119 ~ 13346199 (+)
ushbp1 ushbp1,LOC107747291,LOC107680560,LOC107685353 coding upstream 73165 13316580 ~ 13329122 (+)
LOC122353911 zgc:162969,LOC107680475,LOC107747135,LOC107597149,LOC107757941 coding downstream 191271 13601397 ~ 13604076 (+)
LOC122353909 LOC107680549,LOC107597153,LOC107757943,LOC107685118 coding downstream 228826 13638952 ~ 13648690 (+)
LOC122353752 NA coding downstream 367209 13777335 ~ 13790405 (+)
pde4cb crtc1b,LOC107747102,LOC107680520,LOC107757940,LOC107665846,LOC107553556 coding downstream 381713 13791839 ~ 13844867 (+)
rab3ab rab3a,rab3ab,LOC107553558,LOC107680521,LOC107665838,LOC107597148 coding downstream 435841 13845967 ~ 13858928 (+)
G81458 NA non-coding upstream 9152 13349934 ~ 13393135 (+)
G81454 NA non-coding upstream 86588 13314562 ~ 13315699 (+)
G81448 NA non-coding upstream 89375 13310321 ~ 13312912 (+)
G81427 NA non-coding upstream 173709 13147758 ~ 13228578 (+)
LOC122353896 NA non-coding upstream 383152 12977589 ~ 13019135 (+)
LOC122354466 NA non-coding downstream 354 13410480 ~ 13413881 (+)
G81470 NA non-coding downstream 47030 13457156 ~ 13457955 (+)
G81479 NA non-coding downstream 200477 13610603 ~ 13612675 (+)
G81484 NA non-coding downstream 292752 13702878 ~ 13742111 (+)
G81699 NA non-coding downstream 366044 13776170 ~ 13776466 (+)
LOC122354403 LOC107747219,LOC107747210,LOC107680505,LOC107757944,LOC107597155,LOC559131,LOC107580225,LOC107685131 other upstream 18444 13374021 ~ 13383843 (+)
G81434 NA other upstream 171195 13228943 ~ 13231092 (+)
arid3a arid3a,LOC107685377,LOC107680546,LOC107553545,LOC107747603,LOC107597199 other upstream 191597 13164761 ~ 13210690 (+)
slmapa slmapa,slmap,LOC107680512,LOC107657974,LOC107557391 other upstream 345067 12768207 ~ 13057220 (+)
G81416 rala,LOC107694485,LOC107741991,LOC107552396,LOC107713003,LOC107657963,LOC105901921 other upstream 522974 12875513 ~ 12879313 (+)
LOC122353908 vmac,LOC107680554,LOC107757942,LOC107685109 other downstream 50338 13460464 ~ 13465416 (+)
LOC122353915 vmac,LOC107680554,LOC107685109,LOC107757942 other downstream 291109 13701235 ~ 13704975 (+)
G81717 NA other downstream 477207 13887333 ~ 14306577 (+)
G81722 NA other downstream 611664 14021790 ~ 14030101 (+)
LOC122353763 NA other downstream 942174 14352300 ~ 14354705 (+)

Expression


Co-expression Network