G81609 (rps15,LOC107680474,LOC107685215,LOC107578086)


Basic Information

Item Value
gene id G81609
gene name rps15,LOC107680474,LOC107685215,LOC107578086
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 13253410 ~ 13313479 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU120773
gctttttttctTCAGGCTATTTTGGAggcttttatttacatactcAATTACTTTTTACTTCAGAGGAATGAAGCGGGAAGAATGAGTGGCTCCAATACCCGGACGACCGTGTTTAACAGGCTTGTACGTGATGGAGAACTCTCCAAGGTAATGACCAATCATCTCAGGCTGAAAAGAGACAACAATCATTAGCCATCAACAACCACGGCACATGGAACGGCCGTTTAAACCCTATGCTTCATCTCTACCTTGATTTCAACCTGGTTGAAGGTCTTGCCGTTGTACACGCCGACCATGGATCCAACCATCTCCGGCAGGATGACCATGTCTCTCAGGTGAGTCTTCACCACCTCTGGTTTCTCCATGGGAGGTGCCTCCTTCTTGGCCTTACGGAGGCGCTTGAGGAGAGACTGCTGCTTCCTCCTGAGGCCGCGGTTCAGCCTCCTCCTCTGTCTGGCACAGTACAGCTGCATCAGCtgctcactgagaaacacacagcGGCTTAAATAACATTTCTACACGGGCATCGGATCATTGACAAAACCTCAAGACCGTTACAATAATGCAAGGGTGTCAAACAcagccctgcagagttcagctccaaccctgatcCAGCTCGTCAAGCCATTTAGACCTAGGCTGTATTCAAAAGTCACCCCCTAAACCCTCAGATAGGGCACTGTTTGAGGGGACAGCCATATTAAGTGGCATCTGAAACCACAGTGTACATTCTCACTCgttcaatcccacaatgcacagCAAAAACAAGACTATGCACACAGACTTTAGAATCCCCATAATGCAGTGAGTGTAGGGAATAGTGAACGAGAGTATAAGGGGCGATTTCAGACACAGCCCTAATTGAAGAGTTGcaactaaactctgcagggttTCATCCTTGCAATAATGAAACTAATGTTAATTTCAATATAAATTAATCGTTCAAGCCGATTGATCACATTATGGACTACAAAGGCAATGAGATTCGAGCTGAGAGTTTTGTATTGAATTTTTATTCCGAAAATACCACTAAAAAAAGTGATACGGACTACATTAATGTGTCAAATTAAGGTCTAAAATGTCGCAAAACAATCTTAGCATTTAATAGATTCCCAAAATAAACATCCTCAAATCGCGATGCATTATATTCAATCTGACCACATTTGATAAGTGAAGATAAACTCGCAATTAAAGCtcttattttttcacattttaaagcattgcCGAACACGGGGCCGAGTGATTTCCACTGCCATGGCCGTTCTGAGCGCCTTGCTCCTCTCCTCACTCACACAACCACCTCAGATCTCCACACGGCAGAGGTTTGACTCACTAGGACATGTCCAGCAGCTGGTCCAGGTCCACACCTCTGTAGGTGAATTTCCTGAAGGTACGCTTCTTCTTCTGCTCGACGTCCGCCTGCGAAAAACACAACCAGGCAGAAGCTATTGACAAGCAACCGAGAGCGTTATACCGCAAACACACGGCGAGTGACTAAACACGTTCATACTTAAATCCCGCGTTAAAGTCGGAATACATTTGCGAATCCATCACGCTCGATTCAGTACTACAGCGCGAACCCGACGATGCTAATCGTACCAACATCTCTATAAACACTCGTCCCGGGCGAGAAATAACATCGTGAAAGCGAGCATTAGCTCTTTAACAAACTTTGTACGTGTTTTGTACTCGGGTGCGCTTCGTGTTTGCGACAGATTCGTTTGGATTATCGtagatttgtttttcacaaatgaGACGTGAACCTACC

Function

symbol description
rps15 Predicted to be a structural constituent of ribosome. Acts upstream of or within chordate embryonic development. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Orthologous to human RPS15 (ribosomal protein S15).

NR:

description
PREDICTED: 40S ribosomal protein S15 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU120773 True 1768 lncRNA 0.45 2 13253410 13313479

Neighbor

gene id symbol gene type direction distance location
gamt gamt,LOC107747770,LOC107597217,LOC107685360,LOC107680536,LOC107553529,LOC107757934 coding downstream 22267 13227645 ~ 13231143 (-)
LOC122353867 sult6b1,LOC107680496,LOC107552400,LOC107744587,LOC107713000,LOC107557424,LOC107657965 coding downstream 253284 12995247 ~ 13000126 (-)
slc29a1b slc29a1b,LOC107712971,LOC107741993,LOC107552398,LOC107680494,LOC107557422 coding downstream 271570 12967576 ~ 12981840 (-)
dennd6aa dennd6a,LOC107680547,LOC107657973,LOC107597203,LOC107712949 coding downstream 486744 12747106 ~ 12766666 (-)
LOC122353868 NA coding downstream 509265 12738000 ~ 12744145 (-)
nrtn nrtn,LOC107597152,LOC107680454,LOC107747182,LOC107685306,LOC107757927 coding upstream 112775 13426254 ~ 13442667 (-)
ndufa11 ndufa11,LOC107747164,LOC107680555,LOC107685299,LOC107553555,LOC107757926,LOC107597150 coding upstream 143715 13457194 ~ 13459276 (-)
LOC122353919 gadd45ba,gadd45b,LOC107680558,LOC107553537,LOC107757925,LOC107597151 coding upstream 215453 13528932 ~ 13530398 (-)
LOC122353917 gadd45ba,gadd45b,LOC107680558,LOC107553537,LOC107757925,LOC107597151 coding upstream 283910 13597389 ~ 13598903 (-)
lsm4 lsm4,LOC107680485,LOC107597191,LOC107553538 coding upstream 546426 13859905 ~ 13862212 (-)
G81611 NA non-coding downstream 7137 13233801 ~ 13246273 (-)
G81608 NA non-coding downstream 28549 13222525 ~ 13224861 (-)
G81605 NA non-coding downstream 32746 13218964 ~ 13220664 (-)
G81578 LOC107747780 non-coding downstream 92100 13160173 ~ 13161310 (-)
G81540 NA non-coding downstream 205260 13047571 ~ 13048150 (-)
G81619 ushbp1,LOC107680560,LOC107747291,LOC107597197 non-coding upstream 6687 13320166 ~ 13322021 (-)
G81621 ushbp1,LOC107680560,LOC107747291 non-coding upstream 10200 13323679 ~ 13325131 (-)
G81624 NA non-coding upstream 15925 13329404 ~ 13330007 (-)
G81643 NA non-coding upstream 76252 13389731 ~ 13390119 (-)
G81657 LOC107757942 non-coding upstream 146995 13460474 ~ 13701441 (-)
G81512 NA other downstream 195529 12817753 ~ 13057881 (-)
vipb LOC107557425,LOC107657966,LOC107680498,LOC107713001,LOC107741995,LOC107552401 other downstream 263453 12984373 ~ 12989957 (-)
LOC122353859 NA other downstream 287777 12956861 ~ 12965633 (-)
G81523 NA other downstream 357280 12890281 ~ 12896130 (-)
hesx1 hesx1,LOC107712966,LOC107657957,LOC107557393,LOC107680467 other downstream 585822 12663831 ~ 12667588 (-)
ccl25b LOC107680477 other upstream 36457 13349936 ~ 13394008 (-)
ccl44 ccl44,LOC107597158,LOC107685327,LOC107553533 other upstream 53088 13366567 ~ 13369997 (-)
G81663 NA other upstream 259252 13572731 ~ 13593554 (-)
G81666 vmac,LOC107757942,LOC107680554,LOC107685109 other upstream 292793 13606272 ~ 13609604 (-)
G81650 NA other upstream 384620 13698099 ~ 13699958 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location