ccl25b (LOC107680477)


Basic Information

Item Value
gene id ccl25b
gene name LOC107680477
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 13349936 ~ 13394008 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU120814
GCGGCTCCGGCAGAAGAAAAACCTCACTCTTCTGAGAAATCTCTGAGCTTATATGGAAAGGCAGCACTCAACCATGAAGTTTCATGCCCTGTTTCTTCTCCTGCTGCTGGCTTGCATGTATCCCAGTGTGGCACAAGGATCCTACGAAAACTGCTGTTTGAGGTACGCGGCTGTAAAGAAAACCATCAGGAGACATGTCGTGGGTTACAGAGCGCAGGAAACCGACGGAGGATGCAACATTCCCGCCGTTGTCTTGAAGCTGAAGAATTCAAGGACGATCTGTGTCGATCCGAGACTGCCTTGGATACAACCGCTGAAACAGAAACTGAACGAGAAAAACACTGTCAGTGCGTAGTGTGCAGAGGACTGAACTGTGTGTTAACGCaaaatatgttaatgtcacCAACACGCCGGTGTAACAGTATATAGTTTATACCACTATCAATCCTGCTGATTCATATTTCCCACACCTATGAATTGCTATCTTCATGCAGAGGTTCATAATGAACCGTGATGTATGGCCCGCTTCGGTTCATTGTATCAGAACAACGTGAATGTACGAACTGTGAATGTTTGCTCTCTTTGCCTCCAAGCTTTGTAAAGAaactttttacatatttttagcCCAATATAATCTGTGAACAGTATAGCCTGCGTAAGTGTGTTCGTGTTtctgcgtgcgtgcgtgcgtgtgcgtgtgtgtttgagttgGTAAGAGGTcagtacatatacatttaatgcatttttttaaaataaagagttgcAGTTGTGCATTTGAATTGTCAtgtggttttctttttatatccaC
>TU120815
GCGGCTCCGGCAGAAGAAAAACCTCACTCTTCTGAGAAATCTCTGAGCTTATATGGAAAGGCAGCACTCAACCATGAAGTTTCATGCCCTGTTTCTTCTCCTGCTGCTGGCTTGCATGTATCCCAGTGTGGCACAAGGATCCTACGAAAACTGCTGTTTGAGGTACGCGGCTGTAAAGAAAACCATCAGGAGACATGTCGTGGGTTACAGAGCGCAGGAAACCGACGGAGGATGCAACATTCCCGCCGTTGTCTTGAAGCTGAAGAATTCAAGGACGATCTGTGTCGATCCGAGACTGCCTTGGATACAACCGCTGAAACAGAAACTGAACGAGAAAAACACTGTCAGTGCGTAGTGTGCAGAGGACTGAACTGTGTGTTAACGCaaaatatgttaatgtcacCAACACGCCGGTGTAACAGTATATAGTTTATACCACTATCAATCCTGCTGATTCATATTTCCCACACCTATGAATTGCTATCTTCATGCAGAGGTTCATAATGAACCGTGATGTATGGCCCGCTTCGGTTCATTGTATCAGAACAACGTGAATGTACGAACTGTGAATGTTTGCTCTCTTTGCCTCCAAGCTTTGTAAAGAaactttttacatatttttagcCCAATATAATCTGTGAACAGTATAGCCTGCGTAAGTGTGTTCGTGTTtctgcgtgcgtgcgtgcgtgtgcgtgtgtgtttgagttgGTAAGAGGTcagtacatatacatttaatgcatttttttaaaataaagagttgcAGTTGTGCAaaaaaaaaaaaaaaaaaaaaaaaaaaaaaat
>XM_043251368.1
TAGGCAAAATGTGACGGGGGGGGGCGTGGCAGAGTGTCATGTTTTGTTGCTATAAAAACTGAAACGAGCGAAAGGAGGAGATAAGAGCGGCTCCGGCAGAAGAAAAACCTCACTCTTCTGAGAAATCTCTGAGCTTATATGGAAAGGCAGCACTCAACCATGAAGTTTCATGCCCTGTTTCTTCTCCTGCTGCTGGCTTGCATGTATCCCAGTGTGGCACAAGGATCCTACGAAAACTGCTGTTTGAGGTACGCGGCTGTAAAGAAAACCATCAGGAGACATGTCGTGGGTTACAGAGCGCAGGAAACCGACGGAGGATGCAACATTCCCGCCGTTGTCTTGAAGCTGAAGAATTCAAGGACGATCTGTGTCGATCCGAGACTGCCTTGGATACAACCGCTGAAACAGAAACTGAACGAGAAAAACACTGTCAGTGCGTAGTGTGCAGAGGACTGAACTGTGTGTTAACGCaaaatatgttaatgtcacCAACACGCCGGTGTAACAGTATATAGTTTATACCACTATCAATCCTGCTGATTCATATTTCCCACACCTATGAATTGCTATCTTCATGCAGAGGTTCATAATGAACCGTGATGTATGGCCCGCTTCGGTTCATTGTATCAGAACAACGTGAATGTACGAACTGTGAATGTTTGCTCTCTTTGCCTCCAAGCTTTGTAAAGAaactttttacatatttttagcCCAATATAATCTGTGAACAGTATAGCCTGCGTAAGTGTGTTCGTGTTtctgcgtgcgtgcgtgcgtgtgcgtgtgtgtttgagttgGTAAGAGGTcagtacatatacatttaatgcatttttttaaaataaagagttgcAGTTGTGCA

Function

NR:

description
PREDICTED: C-C motif chemokine 21-like

GO:

id name namespace
GO:0050896 response to stimulus biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU120814 False 808 TUCP 0.44 4 13392558 13393922
TU120815 False 804 TUCP 0.43 5 13349936 13393922
XM_043251368.1 True 859 mRNA 0.45 4 13392593 13394008

Neighbor

gene id symbol gene type direction distance location
babam1 babam1,LOC107747315,LOC107680561,LOC107685168 coding downstream 34298 13310322 ~ 13315638 (-)
plvapb plvap,LOC107680480,LOC107747760,LOC107597160,LOC107685179,LOC107757946 coding downstream 42794 13302345 ~ 13307142 (-)
ano8b ano8,ano8b,LOC107685197,LOC107680545,LOC107597162,LOC107747324 coding downstream 62020 13266834 ~ 13287916 (-)
dda1 dda1,LOC107685208,LOC105913185 coding downstream 85003 13261384 ~ 13264933 (-)
abhd8b abhd8b,abhd8,LOC107747334,LOC107578087,LOC107680465 coding downstream 88694 13256637 ~ 13261242 (-)
nrtn nrtn,LOC107597152,LOC107680454,LOC107747182,LOC107685306,LOC107757927 coding upstream 32246 13426254 ~ 13442667 (-)
ndufa11 ndufa11,LOC107747164,LOC107680555,LOC107685299,LOC107553555,LOC107757926,LOC107597150 coding upstream 63186 13457194 ~ 13459276 (-)
LOC122353919 gadd45ba,gadd45b,LOC107680558,LOC107553537,LOC107757925,LOC107597151 coding upstream 134924 13528932 ~ 13530398 (-)
LOC122353917 gadd45ba,gadd45b,LOC107680558,LOC107553537,LOC107757925,LOC107597151 coding upstream 203381 13597389 ~ 13598903 (-)
lsm4 lsm4,LOC107680485,LOC107597191,LOC107553538 coding upstream 465897 13859905 ~ 13862212 (-)
G81624 NA non-coding downstream 19929 13329404 ~ 13330007 (-)
G81621 ushbp1,LOC107680560,LOC107747291 non-coding downstream 24805 13323679 ~ 13325131 (-)
G81619 ushbp1,LOC107680560,LOC107747291,LOC107597197 non-coding downstream 27915 13320166 ~ 13322021 (-)
G81609 rps15,LOC107680474,LOC107685215,LOC107578086 non-coding downstream 36457 13253410 ~ 13313479 (-)
G81611 NA non-coding downstream 103663 13233801 ~ 13246273 (-)
G81657 LOC107757942 non-coding upstream 66466 13460474 ~ 13701441 (-)
LOC122353923 NA non-coding upstream 114649 13508657 ~ 13511170 (-)
G81667 vmac,LOC107680554,LOC107685109,LOC107757942 non-coding upstream 210494 13604502 ~ 13704964 (-)
G81701 NA non-coding upstream 383609 13777617 ~ 13778410 (-)
G81791 NA non-coding upstream 386648 13780656 ~ 13780870 (-)
G81512 NA other downstream 292055 12817753 ~ 13057881 (-)
vipb LOC107557425,LOC107657966,LOC107680498,LOC107713001,LOC107741995,LOC107552401 other downstream 359979 12984373 ~ 12989957 (-)
LOC122353859 NA other downstream 384303 12956861 ~ 12965633 (-)
G81523 NA other downstream 453806 12890281 ~ 12896130 (-)
hesx1 hesx1,LOC107712966,LOC107657957,LOC107557393,LOC107680467 other downstream 682348 12663831 ~ 12667588 (-)
G81663 NA other upstream 178723 13572731 ~ 13593554 (-)
G81666 vmac,LOC107757942,LOC107680554,LOC107685109 other upstream 212264 13606272 ~ 13609604 (-)
G81650 NA other upstream 304091 13698099 ~ 13699958 (-)
G81799 NA other upstream 456327 13850335 ~ 14291509 (-)
G81829 NA other upstream 491675 13885683 ~ 14305124 (-)

Expression


Co-expression Network