G81666 (vmac,LOC107757942,LOC107680554,LOC107685109)


Basic Information

Item Value
gene id G81666
gene name vmac,LOC107757942,LOC107680554,LOC107685109
gene type unknown
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 13606272 ~ 13609604 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU120872
AGCCACAGGTTGCTATGAAGTTGTCGCGGACGACACGTCAGCTGACTGCAAAACAACGCAAACCGTAACACCTGCCTAAACAGGATAATGTCGCAAAGGTAACCGCGCGCTGAGGTCCGTCGCTGCACGCGGGCGCGGAGACTTCCCGAAGCAGACCGCTGTAGCGTCACGCATGCTGAGATCGAGAGAGAGGGAGTTCAGCATCGTTCACTCCGGACCCGCGGAAGATGAGCAGCCCGGCGGCGCGCCGTCGTCGCGGGTGAGAGAGAGCGCGCCTACCGGACCGCCGCTTTTTTTGTCTTCCGCCTCCCGAGCATGTCGTCCCCGTCGCCGGTGCAGATAAGAGAGGCGAACGCGCACCTGGCGGCGCTCCACAGGCGGGTCGCGGACCTGGAGCAGAGGCTGGGGGACGCGGAGAAGACCGTGCGGGAGCAGGCGGAGAGCCTCATCCGCAAAGACGAGCAGCTGAGAGCCACCGCGCAGGAAATCACGGAGGCCAAGGACAAAGAGATTTTCTTCCTCCACGAAGCTCTGTCAATCAGAGGAATCCATCCATAAACTCAACCAAACAATTAAGGAGAAAGACTCTCTAATCGGACAGCTCCAACACCGATGTCAGCTGCTGGACAACATTTGCAAAAGCCGTCCGTTGTTGGACAGCATGCTGGCTCAGATGGCCGAGGCGAGAGGATGGGGCCCGTCGGTGACTTGGGAAGCCCACGACCAACAGCTCTCATGGACGGAGAATCCAGCCCCAGCCGTCTGTCCAACCACAAAGACTTCTCCCTCAGCGAGGACGACTCCGACGATCAGGAATTAGACGGGGTTGTGTTTGGGACCACCGTATGAGAGTCTCAGTTCAACT
>TU120873
AGCCACAGGTTGCTATGAAGTTGTCGCGGACGACACGTCAGCTGACTGCAAAACAACGCAAACCGTAACACCTGCCTAAACAGGATAATGTCGCAAAGGTAACCGCGCGCTGAGGTCCGTCGCTGCACGCGGGCGCGGAGACTTCCCGAAGCAGACCGCTGTAGCGTCACGCATGCTGAGATCGAGAGAGAGGGAGTTCAGCATCGTTCACTCCGGACCCGCGGAAGATGAGCAGCCCGGCGGCGCGCCGTCGTCGCGGGTGAGAGAGAGCGCGCCTACCGGACCGCCGCTTTTTTTGTCTTCCGCCTCCCGAGCATGTCGTCCCCGTCGCCGGTGCAGATAAGAGAGGCGAACGCGCACCTGGCGGCGCTCCACAGGCGGGTCGCGGACCTGGAGCAGAGGCTGGGGGACGCGGAGAAGACCGTGCGGGAGCAGGCGGAGAGCCTCATCCGCAAAGACGAGCAGCTGAGAGCCACCGCGCAGGAAATCACGGAGGCCAAGGACAAAGAGATTTTCTTCCTCCACGAAGCTCTGTCAATCAGAGGAATCCATCCATAAACTCAACCAAACAATTAAGGAGAAAGACTCTCTAATCGGACAGCTCCAACACCGATGTCAGCTGCTGGACAACATTTGCAAA

Function

symbol description
vmac Orthologous to human VMAC (vimentin type intermediate filament associated coiled-coil protein).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU120872 True 865 TUCP 0.59 2 13606272 13609604
TU120873 False 640 TUCP 0.60 2 13606497 13609604

Neighbor

gene id symbol gene type direction distance location
LOC122353917 gadd45ba,gadd45b,LOC107680558,LOC107553537,LOC107757925,LOC107597151 coding downstream 7369 13597389 ~ 13598903 (-)
LOC122353919 gadd45ba,gadd45b,LOC107680558,LOC107553537,LOC107757925,LOC107597151 coding downstream 75874 13528932 ~ 13530398 (-)
ndufa11 ndufa11,LOC107747164,LOC107680555,LOC107685299,LOC107553555,LOC107757926,LOC107597150 coding downstream 146996 13457194 ~ 13459276 (-)
nrtn nrtn,LOC107597152,LOC107680454,LOC107747182,LOC107685306,LOC107757927 coding downstream 163605 13426254 ~ 13442667 (-)
babam1 babam1,LOC107747315,LOC107680561,LOC107685168 coding downstream 290634 13310322 ~ 13315638 (-)
lsm4 lsm4,LOC107680485,LOC107597191,LOC107553538 coding upstream 250301 13859905 ~ 13862212 (-)
ddx49 ddx49,LOC107747066,LOC107757937 coding upstream 252627 13862231 ~ 13866394 (-)
LOC122354669 comp,LOC107680551,LOC107747026,LOC107733073,LOC107665851 coding upstream 280307 13889911 ~ 13899165 (-)
zrsr2 zrsr2,LOC107753840,LOC107729896,LOC107602790 coding upstream 757567 14367171 ~ 14373481 (-)
txlng txlng,LOC107562084,LOC107753838,LOC107656109,LOC107665847,LOC107723067,LOC107602792 coding upstream 772423 14382027 ~ 14391444 (-)
LOC122353923 NA non-coding downstream 95102 13508657 ~ 13511170 (-)
G81643 NA non-coding downstream 216153 13389731 ~ 13390119 (-)
G81624 NA non-coding downstream 276265 13329404 ~ 13330007 (-)
G81621 ushbp1,LOC107680560,LOC107747291 non-coding downstream 281141 13323679 ~ 13325131 (-)
G81619 ushbp1,LOC107680560,LOC107747291,LOC107597197 non-coding downstream 284251 13320166 ~ 13322021 (-)
G81701 NA non-coding upstream 168013 13777617 ~ 13778410 (-)
G81791 NA non-coding upstream 171052 13780656 ~ 13780870 (-)
G81834 NA non-coding upstream 512872 14122476 ~ 14130140 (-)
LOC122353702 NA non-coding upstream 568260 14177864 ~ 14178450 (-)
G81841 NA non-coding upstream 704165 14313769 ~ 14315698 (-)
G81663 NA other downstream 12718 13572731 ~ 13593554 (-)
ccl25b LOC107680477 other downstream 212264 13349936 ~ 13394008 (-)
ccl44 ccl44,LOC107597158,LOC107685327,LOC107553533 other downstream 236275 13366567 ~ 13369997 (-)
G81512 NA other downstream 548391 12817753 ~ 13057881 (-)
G81650 NA other upstream 88495 13698099 ~ 13699958 (-)
G81799 NA other upstream 240731 13850335 ~ 14291509 (-)
G81829 NA other upstream 276079 13885683 ~ 14305124 (-)
chrna4b chrna4b,LOC107753893,LOC107562063,LOC107655994,LOC107665840,LOC107602782,LOC107723056 other upstream 832997 14442601 ~ 14451740 (-)
G81866 NA other upstream 925114 14534718 ~ 14536392 (-)

Expression


Co-expression Network