G81846 (rbb4l,LOC107562083,LOC107753839,LOC105893332,LOC103023991,LOC106943324)


Basic Information

Item Value
gene id G81846
gene name rbb4l,LOC107562083,LOC107753839,LOC105893332,LOC103023991,LOC106943324
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 14374710 ~ 14375944 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU121132
GACCTGGCTTGGATGGGTGTTTGGTGTAGTCAAACACCAGCACGTCCGAGGTGGGGGTCTTAGTGGCGATGATGCAGGGGTTTTGTGGCATGTATCTGGCTCTATTCACTTCTCCTTCATGGTTGATCTTAATTTCGATTTCGATCTTTCCGCTCACCGACCCAAACCCTCCGAactctgCTCCTTTCTCGCTGTCGTAGTGGGACGCATCAAACTGAGCATCGTCGTTGGGGATCTGAACACTGGCGATGACCAAGTGGTTCTGCTcatctgaagtgtgtgtgcCCAACACCAGCCGATGAACCACGTAGTCCTTTCCCTCGGG

Function

symbol description
rbb4l Acts upstream of or within fin regeneration and hematopoietic progenitor cell differentiation. Predicted to be located in nucleus. Predicted to be part of ESC/E(Z) complex. Is expressed in mesoderm. Orthologous to several human genes including RBBP7 (RB binding protein 7, chromatin remodeling factor).

NR:

description
PREDICTED: histone-binding protein RBBP7

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU121132 True 325 lncRNA 0.53 2 14374710 14375944

Neighbor

gene id symbol gene type direction distance location
zrsr2 zrsr2,LOC107753840,LOC107729896,LOC107602790 coding downstream 1229 14367171 ~ 14373481 (-)
LOC122354669 comp,LOC107680551,LOC107747026,LOC107733073,LOC107665851 coding downstream 475545 13889911 ~ 13899165 (-)
ddx49 ddx49,LOC107747066,LOC107757937 coding downstream 508316 13862231 ~ 13866394 (-)
lsm4 lsm4,LOC107680485,LOC107597191,LOC107553538 coding downstream 512498 13859905 ~ 13862212 (-)
LOC122353917 gadd45ba,gadd45b,LOC107680558,LOC107553537,LOC107757925,LOC107597151 coding downstream 775807 13597389 ~ 13598903 (-)
txlng txlng,LOC107562084,LOC107753838,LOC107656109,LOC107665847,LOC107723067,LOC107602792 coding upstream 6083 14382027 ~ 14391444 (-)
elovl1b elovl1b,LOC107665848,LOC107656106,LOC107753833,LOC107562086,LOC107602768 coding upstream 112433 14488377 ~ 14511622 (-)
mast3b LOC107753827,LOC107723058,LOC107656100,LOC107692230,LOC107572946 coding upstream 183957 14559901 ~ 14589170 (-)
si:ch211-1a19.2 NA coding upstream 275321 14651265 ~ 14653122 (-)
sid1 NA coding upstream 277492 14653436 ~ 14654520 (-)
G81841 NA non-coding downstream 59012 14313769 ~ 14315698 (-)
LOC122353702 NA non-coding downstream 196260 14177864 ~ 14178450 (-)
G81834 NA non-coding downstream 244570 14122476 ~ 14130140 (-)
G81791 NA non-coding downstream 593840 13780656 ~ 13780870 (-)
G81701 NA non-coding downstream 596300 13777617 ~ 13778410 (-)
G81873 NA non-coding upstream 102566 14478510 ~ 14479111 (-)
G81874 zfyve9b,LOC107723065,LOC107753830 non-coding upstream 103253 14479197 ~ 14479429 (-)
G81875 NA non-coding upstream 106216 14482160 ~ 14482579 (-)
G81876 NA non-coding upstream 107075 14483019 ~ 14483431 (-)
G81877 NA non-coding upstream 107552 14483496 ~ 14483931 (-)
G81829 NA other downstream 69586 13885683 ~ 14305124 (-)
G81799 NA other downstream 83201 13850335 ~ 14291509 (-)
G81650 NA other downstream 674752 13698099 ~ 13699958 (-)
G81666 vmac,LOC107757942,LOC107680554,LOC107685109 other downstream 765106 13606272 ~ 13609604 (-)
G81663 NA other downstream 781156 13572731 ~ 13593554 (-)
chrna4b chrna4b,LOC107753893,LOC107562063,LOC107655994,LOC107665840,LOC107602782,LOC107723056 other upstream 66657 14442601 ~ 14451740 (-)
G81866 NA other upstream 158774 14534718 ~ 14536392 (-)
G82067 NA other upstream 829017 15204961 ~ 15214058 (-)
LOC122354561 NA other upstream 857989 15233933 ~ 15235436 (-)
LOC122354564 NA other upstream 1024974 15400918 ~ 15401691 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G429842 NA non-coding CI01000305 null 392445 ~ 393725 (-)