G82160 (krt94,LOC107753855,LOC107680518,LOC107562075,LOC107674540,LOC107718880,LOC107563560)


Basic Information

Item Value
gene id G82160
gene name krt94,LOC107753855,LOC107680518,LOC107562075,LOC107674540,LOC107718880,LOC107563560
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 15420805 ~ 15446837 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU121643
ACCTTGTCTTTTAGGTCCTTGATGGTGTTCCAGTAGGGGCTGTAGTCTCTCTGTGCGATCGGCCCTTTCTTCTCATAGTATTCGCGGATCTGCCTCTCCAAATTGGCATTGGCAGCCTCCAGCGAGCGCACCTTCTCCAGGTAGGAAGCCAGGCGGTCATTCAGGTTTTGCATGGTGGCCTTCTCATTCAGCTGGACCAAGTCACTATCGCCTCCAACGAAGATCCCACCACCGAATCCTCCTCCATATCCTCCGCCGTATCCACCTCCATATCCTCCACCCAAACCGTATCCTCCACCACCACCGACTCTGTAAGTGGAGATGCGGGTGCCTCCTCCTATACCACCTCCATAGACGCTGTAGGCTTTCTGTGGAGCTGCCAACGAACTACCCCGAGTCTTGGTGATAATGGACTTTGAGGTCACAGTCCTGGGAACTGTGGTAGTTGTCGAGCGAATGGACATGGTGGATGGATGCAGAGATGAGAAGAACACAGAGAGGACACTACAGGAAACTGCTAGAGTTGTCCTGAAG
>TU121644
ACCTTGTCTTTTAGGTCCTTGATGGTGTTCCAGTAGGGGCTGTAGTCTCTCTGTGCGATCGGCCCTTTCTTCTCATAGTATTCGCGGATCTGCCTCTCCAAATTGGCATTGGCAGCCTCCAGCGAGCGCACCTTCTCCAGGTAGGAAGCCAGGCGGTCATTCAGGTTTTGCATGATCGCACCTTATCCAGGTAGGTTGCCAGACGGTCATTTAGGTTCTGCATGGTCGCCTTCTCATTGACGGGCACATTGAGGTCCATATCGCCTCCTCCAAAGCCTCCTCCAGCGCCACCACCAAAGCCGAACCCTGCACCAGCACCACCACCAAAGCCGTAGCCGgctccccctcctcctccaccaGCTGCAAAGCTGCTTGCCCCGGTGGAGATACGGACCCCACGGCTTCCTGCACCACCATACACGCTGCTGGCACGCATGGCGCCTATGCGACCACCACCTCCTCCCCCAATCATGGATGACCGAGACATGCTTCCCATAGAAACACCCCGCAAGGAGTTTCCACCGAAGCCCCCTCCGGAAGATACAAAACTTTGGCTGCTATAGGACGTCATTGCTGGGGTGCAGAGGAGAGAGTCTTTTTGCTGGAAGG

Function

symbol description
krt94 Predicted to enable structural molecule activity. Predicted to be located in intermediate filament.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU121643 False 534 lncRNA 0.53 2 15440504 15446837
TU121644 True 609 lncRNA 0.57 3 15420805 15446837

Neighbor

gene id symbol gene type direction distance location
jupa jupa,LOC107562072,LOC107753847,LOC107680531,LOC108438667,LOC106564751 coding downstream 49123 15349738 ~ 15371682 (-)
gpr179 LOC107753843,LOC107718864,LOC107680456,LOC107562070,LOC107563489,LOC106564745 coding downstream 137961 15267975 ~ 15282844 (-)
LOC122353770 NA coding downstream 175105 15242488 ~ 15245700 (-)
LOC122353768 NA coding downstream 206560 15209438 ~ 15214245 (-)
LOC122353767 NA coding downstream 215071 15204939 ~ 15205734 (-)
hyls1 si:dkey-23f9.4,LOC107680541,LOC107597141,LOC107674570,LOC107563627,LOC107718881,LOC107753882 coding upstream 21133 15467970 ~ 15474238 (-)
ptp4a1 ptp4a1,LOC107563655,LOC107597142 coding upstream 42783 15489620 ~ 15493617 (-)
myom2a LOC107674554,LOC107680534,LOC107597144,LOC107753884,LOC107718897 coding upstream 52277 15499114 ~ 15521716 (-)
ly75 LOC107680532,LOC107674542,LOC107563496,LOC107597186,LOC107753885,LOC107718898 coding upstream 76506 15523343 ~ 15550688 (-)
itgb6 itgb6,LOC107747010,LOC107680548,LOC107597145,LOC107674564,LOC107718899 coding upstream 130769 15577606 ~ 15590464 (-)
G82190 LOC107562076,LOC107753881,LOC107680504,LOC107718872,LOC107674524,LOC107563570 non-coding downstream 78387 15337927 ~ 15342418 (-)
G82189 NA non-coding downstream 84982 15335006 ~ 15335823 (-)
G82187 NA non-coding downstream 88736 15331657 ~ 15332069 (-)
LOC122354567 abcc10,LOC107680503,LOC107753844,LOC107718869,LOC107674523 non-coding downstream 100674 15317492 ~ 15320131 (-)
G82181 NA non-coding downstream 106325 15313945 ~ 15314480 (-)
G82216 NA non-coding upstream 24469 15471306 ~ 15471689 (-)
G82214 NA non-coding upstream 50813 15497650 ~ 15498104 (-)
G82260 NA non-coding upstream 166309 15613146 ~ 15613851 (-)
G82286 LOC107593138,LOC107655962,LOC107753871 non-coding upstream 270760 15717597 ~ 15732758 (-)
G82294 NA non-coding upstream 281952 15728789 ~ 15729815 (-)
LOC122354564 NA other downstream 19114 15400918 ~ 15401691 (-)
LOC122354561 NA other downstream 185369 15233933 ~ 15235436 (-)
G82067 NA other downstream 206747 15204961 ~ 15214058 (-)
G81866 NA other downstream 884413 14534718 ~ 14536392 (-)
chrna4b chrna4b,LOC107753893,LOC107562063,LOC107655994,LOC107665840,LOC107602782,LOC107723056 other downstream 969065 14442601 ~ 14451740 (-)
pla2r1 pla2r1,LOC107674555,LOC107564855,LOC107747570 other upstream 105519 15552356 ~ 15577065 (-)
LOC122354045 NA other upstream 148728 15595565 ~ 15614937 (-)
LOC122353775 srsf1,srsf1a,LOC107704814,LOC102236359,LOC103148541,LOC106947524,LOC106593141,LOC107661108,LOC107731957,LOC108431323,LOC107554282,LOC107727915,LOC108278759 other upstream 1143969 16590806 ~ 16593930 (-)
LOC122353776 NA other upstream 1157167 16604004 ~ 16606580 (-)
LOC122354244 rab7a,rab7,LOC102230535,LOC108254780,LOC106583206,LOC105017191,LOC106582926 other upstream 1332075 16778912 ~ 16912574 (-)

Expression


Co-expression Network