G82588 (phf2,LOC107556181,LOC107685641)


Basic Information

Item Value
gene id G82588
gene name phf2,LOC107556181,LOC107685641
gene type unknown
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 17550581 ~ 17559836 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU122326
TCTGGACCAGCATGACCGAGGCGATTTTTCCCGTCTTGTAGACTGACGTAACAATATTACAATGAAAGGATGCATTTTCTCGGGGCTTCATGAATGTCTCGGCGCTCGTATAGTCACCAGGGGGCATGCACACGTCAATGCAGCGCGGGAAACATTTTAACATCGTAACGTTGTAACGTCGGATCGGGGGAACGTTCGAATGGACGCAGGAGCAGCTCCGCGGCTCTTCATATCGCTGTAGTTTGTGTTACGGGAGGTTCCTGCTGCCCCCATCCATCTCTCCGGCTGTTGTTGTGAATTGATCTAACATGGCGACTGTACCCGTCTATTGCATCTGCAGATTACCTTACGACGTAACCCAGTTTATGATCGAATGCGACGCCTGCAAAGACTGGTTTCACGGCAGCTGTGTGGGAGTGGATGAAGATGAAGCACCAGATATTGACATCTATCACTGTCCTAACTGTGAAAAGACCCACGGCAAATCCACCTtgaaaaagaaaaagagctggAATAAGCATGACACGGGGCAAAGTGGAGACGTCAGACCGGTTCAAAATGGCAGTCAGGTGTTCATTAAAGAGCTGCGCAGCAGGACATTCCCCAGTTCAGAAGATGTGGTGGTCAAGCTGTCTGGAAGTCAGATGACGCTGGACTACCTTGAGGAAAACTATGTTGgaCCTGATGTTCTTGTGGATGTTGTCGATGTTAccaaacagacaaacagcaAGATGAAGTTAAAAGAATTTGTTGATTATTACTACagcacaaacagaaagaaagtaTTAAATGTGATCAACCTAGAGT

Function

symbol description
phf2 Predicted to enable several functions, including histone demethylase activity (H3-K9 specific); transcription coactivator activity; and transition metal ion binding activity. Predicted to be involved in negative regulation of ribosomal DNA heterochromatin assembly; protein demethylation; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within chromatin organization. Predicted to be located in kinetochore and nucleolus. Orthologous to human PHF2 (PHD finger protein 2).

NR:

description
PREDICTED: lysine-specific demethylase phf2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU122326 True 807 TUCP 0.47 6 17550581 17559836

Neighbor

gene id symbol gene type direction distance location
LOC122353607 kbtbd8,LOC107600285,LOC107753780,LOC107557775,LOC107729395,LOC107656060,LOC107699793 coding downstream 95807 17449267 ~ 17454774 (-)
suclg2 suclg2,LOC107753779,LOC107729402,LOC107699794,LOC107656059 coding downstream 366462 17096321 ~ 17184119 (-)
lrig1 lrig1,LOC107753782,LOC107716980,LOC107557776,LOC107600281 coding downstream 558311 16958903 ~ 16992270 (-)
LOC122353589 LOC103358720 coding downstream 658649 16889590 ~ 16891932 (-)
LOC122354367 LOC103358720 coding downstream 781518 16766373 ~ 16769063 (-)
LOC122353782 LOC107727791,LOC107581429,LOC107691380 coding upstream 18489 17578325 ~ 17590223 (-)
LOC122354584 si:ch211-232b12.5,LOC107727806,LOC107655055,LOC107562773,LOC107749476,LOC107599616,LOC107685688 coding upstream 122224 17682060 ~ 17692681 (-)
LOC122354069 NA coding upstream 242557 17802393 ~ 17805778 (-)
LOC122354072 NA coding upstream 250084 17809920 ~ 17813328 (-)
eogt eogt,LOC107729408,LOC107558884 coding upstream 492177 18052013 ~ 18064487 (-)
G82582 NA non-coding downstream 4506 17534848 ~ 17546075 (-)
LOC122353733 NA non-coding downstream 74570 17465158 ~ 17476011 (-)
G82578 NA non-coding downstream 102900 17447159 ~ 17447681 (-)
G82496 NA non-coding downstream 551715 16998661 ~ 16998866 (-)
G82447 NA non-coding downstream 902027 16610565 ~ 16648554 (-)
G82577 NA non-coding upstream 2305 17562141 ~ 17563010 (-)
G82606 NA non-coding upstream 74967 17634803 ~ 17642527 (-)
LOC122354623 NA non-coding upstream 81200 17641036 ~ 17642527 (-)
G82619 NA non-coding upstream 134083 17693919 ~ 17694508 (-)
G82628 LOC107738115,LOC107654540 non-coding upstream 150615 17710451 ~ 17710806 (-)
G82585 LOC107691335,LOC107685641,LOC107556181,LOC107749503 other downstream 10410 17537503 ~ 17540171 (-)
LOC122354244 rab7a,rab7,LOC102230535,LOC108254780,LOC106583206,LOC105017191,LOC106582926 other downstream 638007 16778912 ~ 16912574 (-)
LOC122353776 NA other downstream 944001 16604004 ~ 16606580 (-)
LOC122353775 srsf1,srsf1a,LOC107704814,LOC102236359,LOC103148541,LOC106947524,LOC106593141,LOC107661108,LOC107731957,LOC108431323,LOC107554282,LOC107727915,LOC108278759 other downstream 956651 16590806 ~ 16593930 (-)
LOC122354045 NA other downstream 1935644 15595565 ~ 15614937 (-)
G82590 fam120a,LOC107581418,LOC107685640,LOC107691381,LOC107749502,LOC107556189 other upstream 13766 17573602 ~ 17576984 (-)
LOC122354622 NA other upstream 74970 17634806 ~ 17640897 (-)
LOC122354587 prpsap2,LOC107720040,LOC107581734,LOC107737786 other upstream 154916 17714752 ~ 17716696 (-)
LOC122353787 prkd2,LOC107728165,LOC107699186,LOC107699228,LOC107752286 other upstream 183080 17742916 ~ 17771610 (-)
LOC122354073 NA other upstream 260437 17820273 ~ 17820936 (-)

Expression


Co-expression Network