G82932 (psmd6,LOC107696848)


Basic Information

Item Value
gene id G82932
gene name psmd6,LOC107696848
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 18663421 ~ 18664566 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU122908
CTTATCACCGATGCGTATGAGATATTCAGCTTTGGCCATCATGGCATCTCTGATCTCACTCTCTCCCAAGTTCTTCTCGGCATCTTCCAAAACATCATCCAGCCTTTTCAGTTCGTCCTCATTTGCTTTCTTCATCTTACTCAACAGATCTGTGTCCGCCTGCCACTTCAGCTCTTTACACAGGGCTTCATAGTATGGGGCCATATTGAGTTTGATGGCGTCCATCAGCTCGCTCTTCACTTTAGCATCCTGTCTGTGACCATCCAGAGTCAGTAAAAACTTCAGCTGAGCTATTCTCAGATTAGGGTTTTTAGGTAAACCCTCTTCCTCCAGGTTTTCCAAAGGCATATTTGCGGAGTTAAAAGAGATCCAGAGAAGGACGGGGGTCTAGGTTATGAATGGGAGTGATGATGATAAACTAGAGGCAACGATGACTACGGggaaatctaaacaaaaaaaatgtgtacattcA
>TU122910
tcccccttctaaTCCAGCATGACTATGAATAAGCAGTTTGAAATCAAACCTTATCACCGATGCGTATGAGATATTCAGCTTTGGCCATCATGGCATCTCTGATCTCACTCTCTCCCAAGTTCTTCTCGGCATCTTCCAAAACATCATCCAGCCTTTTCAGTTCGTCCTCATTTGCTTTCTTCATCTTACTCAACAGATCTGTGTCCGCCTGCCACTTCAGCTCTTTACACAGGGCTTCATAGTATGGGGCCACTGTTGAGTTTGATGGCGTCCATCAGCTCGCTCTTCACTTTAGCATCCTGTCTGTGACCATCCAGAGTCAGTAAAAACTTCAGCTGAGCTATTCTCAGATTAGGGTTTTTAGGTAAACCCTCTTCCTCCAGGTTTTCCAAAGGCATATTTGCGGAGTTAAAAGAGATCCAGAGAAGGACGGGGGTCTAGGTTATGAATGGGAGTGATGATGATAAACTAGAGGCAACGATGACTACGGggaaatctaaacaaaaaaaatgtgtacattcA

Function

symbol description
psmd6 Predicted to enable enzyme regulator activity. Acts upstream of or within lens fiber cell differentiation and proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be part of proteasome regulatory particle. Is expressed in ciliary marginal zone; head; and lens epithelium. Orthologous to human PSMD6 (proteasome 26S subunit, non-ATPase 6).

NR:

description
PREDICTED: 26S proteasome non-ATPase regulatory subunit 6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU122908 False 472 lncRNA 0.44 2 18663421 18664517
TU122910 True 522 lncRNA 0.44 2 18663421 18664566

Neighbor

gene id symbol gene type direction distance location
slc2a9l1 LOC107728625,LOC107590179,LOC107655953 coding downstream 2331 18655864 ~ 18661090 (-)
rhol rhol,LOC107696845,LOC107717962,LOC107551427 coding downstream 154023 18508083 ~ 18509398 (-)
phtf1 zgc:175264,LOC107590164,LOC107656035,LOC107728637,LOC107717961,LOC107551520 coding downstream 279818 18373225 ~ 18383603 (-)
pfkfb2b pfkfb2b,pfkfb2,LOC107728632,LOC108436129,LOC108255158,LOC107590165 coding downstream 290536 18363114 ~ 18372885 (-)
id1 id1,LOC107556485,LOC107696819,LOC107717968,LOC106565791 coding downstream 329512 18332802 ~ 18333909 (-)
LOC122354102 atxn7,LOC107696847,LOC107739287,LOC107550752,LOC107728624,LOC107590160,LOC107656031 coding upstream 3345 18667911 ~ 18696691 (-)
synpra synpr,si:dkey-30j16.3,LOC107696822,LOC107739311,LOC107656028,LOC107728645 coding upstream 39565 18704131 ~ 18724999 (-)
nampt2 namptb,LOC107728616,LOC107696850,LOC107739284,LOC107590159,LOC107550476,LOC108435731 coding upstream 66280 18730846 ~ 18747039 (-)
c11h3orf14 LOC107728644,LOC107556316,LOC107656026,LOC107590156,LOC107739282 coding upstream 191619 18856185 ~ 18858221 (-)
ogfr2 NA coding upstream 195059 18859625 ~ 18863328 (-)
G82918 NA non-coding downstream 53362 18609724 ~ 18610059 (-)
G82753 LOC107600292,LOC107656050,LOC107746889 non-coding downstream 530291 18125988 ~ 18133130 (-)
LOC122353822 NA non-coding downstream 541184 18113348 ~ 18122237 (-)
LOC122354075 NA non-coding downstream 843962 17818902 ~ 17819459 (-)
G82628 LOC107738115,LOC107654540 non-coding downstream 952615 17710451 ~ 17710806 (-)
G82934 NA non-coding upstream 34686 18699252 ~ 18699565 (-)
G82950 NA non-coding upstream 167610 18832176 ~ 18838951 (-)
G83012 zgc:113307,LOC107655951,LOC107590174,LOC107736072,LOC107675829,LOC107556012,LOC107739306,LOC107728600 non-coding upstream 548386 19212952 ~ 19213174 (-)
G83013 NA non-coding upstream 553300 19217866 ~ 19218080 (-)
G83190 NA non-coding upstream 1296517 19961083 ~ 19962665 (-)
trnav-aac_25 NA other downstream 92198 18571151 ~ 18571223 (-)
trnav-aac_24 NA other downstream 92973 18570376 ~ 18570448 (-)
fgd5a LOC107728634,LOC107600300,LOC107656043,LOC107696838,LOC107746894 other downstream 431900 18197829 ~ 18231521 (-)
mustn1b mustn1,mstn1,LOC103145767 other downstream 526033 18135884 ~ 18137388 (-)
tafa4b fam19a4b,fam19a4,LOC107655986,LOC107600333,LOC107558879,LOC107696804,LOC107729393 other downstream 615298 18008365 ~ 18048123 (-)
G83230 golt1a,got1a,LOC107727772 other upstream 1502739 20167305 ~ 20171305 (-)
G83592 LOC107727835,LOC107561779,LOC107685696,LOC107600308 other upstream 2165230 20829796 ~ 20839292 (-)
kaznb kaznb,LOC107597004,LOC107749453,LOC107565459,LOC107727805,LOC107685722,LOC108424680,LOC105028825,LOC106582810,LOC102784869 other upstream 2559701 21224267 ~ 21349112 (-)
efcc1 efcc1,LOC107727832,LOC107685653,LOC107749439,LOC107551117,LOC107581369 other upstream 2893458 21558024 ~ 21576331 (-)
G83871 fam120a,LOC107685640,LOC107581418,LOC107749502,LOC107691381,LOC107556189 other upstream 3353804 22018370 ~ 22021101 (-)

Expression


Co-expression Network